BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0698.p (1001 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodies... 1733 0.0 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 371 e-103 gi|300312026|ref|YP_003776118.1| signal transduction protein con... 361 e-100 gi|300314042|ref|YP_003778134.1| signal transduction protein con... 350 2e-97 gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [... 330 4e-91 >gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodiesterase A protein [Herbaspirillum seropedicae SmR1] Length = 1002 Score = 1733 bits (4488), Expect = 0.0, Method: Compositional matrix adjust. Identities = 838/989 (84%), Positives = 907/989 (91%), Gaps = 8/989 (0%) Query: 1 MGSQESFAGQFDQQPDVLRDRPSLHEEEREALLGALWRCMAILELAADGTVLEANDNLLA 60 MGSQ+SF G+ D Q L ER+ALL ALWR MAILE +ADGTVLEAN+N LA Sbjct: 1 MGSQDSFMGEVDHQ--------RLSGSERDALLAALWRSMAILEFSADGTVLEANENFLA 52 Query: 61 MLGYQRHELVGQHHRMLCDPAYVGTDDYQQFWQHLRQGEVIAGTLQRRRVDGTTVWLEAL 120 MLGY+R ++VGQHHRMLCDPAYV TD YQQFW+HLR+GE+IAGTLQRR V G TVWLEAL Sbjct: 53 MLGYRRADVVGQHHRMLCDPAYVQTDAYQQFWEHLRKGELIAGTLQRRHVGGATVWLEAL 112 Query: 121 CSPILDHCGQLQKVISVAADISSHIDDSRHSNNVLSALNRSLGVIELSPEGRILAVNRNY 180 CSPILD GQL KVISVAADIS+HIDDSRHSN++LSALNRSLGV+ELSPEG ILA N NY Sbjct: 113 CSPILDAQGQLLKVISVAADISAHIDDSRHSNSILSALNRSLGVVELSPEGVILAANGNY 172 Query: 181 LKTMEYLAEDLLGQPHSVLCDPDYAGSEQYAAFWRDVCNGRFFSGRFPRRTRSGRIIWWE 240 LKTMEYLAEDLLGQPHS+LC+ DYA SE+Y FWRDV GRFFSGRFPRRTRSGR IWWE Sbjct: 173 LKTMEYLAEDLLGQPHSILCEADYAASEEYTCFWRDVSLGRFFSGRFPRRTRSGRTIWWE 232 Query: 241 ATYSPLLDVHGKAERVICIGNDVTYRVTREKSDREHLHLLSLGINETDNAVLITDEKNRI 300 ATYSPLLD HGKAERVICIG DVTYRVTREKSDREHLHLLSLGINETDNAVLITD++NRI Sbjct: 233 ATYSPLLDAHGKAERVICIGTDVTYRVTREKSDREHLHLLSLGINETDNAVLITDDQNRI 292 Query: 301 VFHNTGFTRMLGFQSQQVIGKLPRELFANHPSFVKSIERCHGELLQGHSFHTEELIHDFH 360 VFHNTGFTRMLGF+SQQVIG+LP ELFA+ P+FVKS+ERCHGEL+QG S+HTEELIHD Sbjct: 293 VFHNTGFTRMLGFESQQVIGRLPGELFASRPTFVKSLERCHGELVQGRSYHTEELIHDMQ 352 Query: 361 DQPVWISAVTNPILDAAGRLINAVCVMTDITNTKVHEVLQYRVLNAMARDASLPEQMSLL 420 +QPVWISAV NPILD AG+LI+AVCVMTDITNTKVHEVLQYRVLNAMARD+SL EQM+LL Sbjct: 353 EQPVWISAVVNPILDGAGKLIHAVCVMTDITNTKVHEVLQYRVLNAMARDSSLSEQMNLL 412 Query: 421 CEEVERVAPEVIASVLRVDEQGRLHTLAAPSLPDIYTRAIEGLQIGPLVGACGSAAFTGE 480 CEEVERVAPEVIASVLRVDE G L TLAAPSLP+ Y++AI+GL +GP+VG CGSAA+TG+ Sbjct: 413 CEEVERVAPEVIASVLRVDEHGCLRTLAAPSLPEAYSKAIDGLHVGPMVGCCGSAAYTGQ 472 Query: 481 AVISEDIASDPRWSEFKELALDHGLHACWSTPIKSADGKVIGTFGFYFRQPRQPSAFHHL 540 VISEDI +DP W+++K LAL HGL ACWSTPIKSA G+VIGTFGFY+R P QPSAFHHL Sbjct: 473 TVISEDIQTDPHWNDYKHLALPHGLRACWSTPIKSASGQVIGTFGFYYRHPGQPSAFHHL 532 Query: 541 LVDAGLHLCALAIEREASRARIHQLAFYDSLTGLPNRSLLLVQAGQAIATAERDHNTVAV 600 LV+AGLHLCALAIERE +RARIHQLAFYDSLTGLPNRSLLLVQAGQAIA AER+ +TVAV Sbjct: 533 LVEAGLHLCALAIEREDARARIHQLAFYDSLTGLPNRSLLLVQAGQAIAAAERNCSTVAV 592 Query: 601 MFIDLDRFKQVNDSLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVLTQYEPEH 660 MFIDLDRFKQVNDSLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVLTQY+ +H Sbjct: 593 MFIDLDRFKQVNDSLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVLTQYDTQH 652 Query: 661 LADVVKRVQERLAMPCHINGTPLNPSASIGVALFPTNGHDIETLLHRADIAMYQAKAVNR 720 L +VVKR+QERLAMPCHINGTPLNPSASIGVA+FP NG+DIETLLHRADIAMYQAKAVNR Sbjct: 653 LTEVVKRIQERLAMPCHINGTPLNPSASIGVAIFPDNGNDIETLLHRADIAMYQAKAVNR 712 Query: 721 GRFSFFSEEMNSLAQERLALESALRDALRSGDLELHFQPQINLHDRSLYGVEALARWHDA 780 GRFSFFSEEMNS+AQERLALESALRDALR GDLEL+FQPQI LHD+SL+GVEALARWH Sbjct: 713 GRFSFFSEEMNSMAQERLALESALRDALRGGDLELNFQPQIKLHDQSLHGVEALARWHHP 772 Query: 781 QLGQISPGRFIPIAEQCGLIGELGKWALEEACFQLSDWRRRGIQIPTISVNLSATNFHDL 840 QLGQISPGRFIPIAE+CGLIGELGKWALEEACFQLSDWRRRGIQ+P+ISVNLSATNFHDL Sbjct: 773 QLGQISPGRFIPIAEECGLIGELGKWALEEACFQLSDWRRRGIQVPSISVNLSATNFHDL 832 Query: 841 ELPQFVTGLLRRYNLVSTDLTLEITETVLMDTNPSTSQTISAVHALGIPLAMDDFGTGYS 900 +LPQFVTGLLRRY L +DLTLEITETVLMDTNPSTSQTI+AVHALGIPLAMDDFGTGYS Sbjct: 833 DLPQFVTGLLRRYALEPSDLTLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYS 892 Query: 901 SLGYLRKLPVSELKLDQSFVRDMAKDEAVSALTNAVIRIGESLKLTVVAEGVEDADQYRL 960 SLGYLRKLPVSELKLDQSFVRDMAKD AVSALTNAVIRIGESLKLTVVAEGVEDA+QY L Sbjct: 893 SLGYLRKLPVSELKLDQSFVRDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYAL 952 Query: 961 LVSQGCDVAQGYYFSRPMSAHQLEGWVRE 989 L+SQGCDVAQGY FSRPMSA LE WVR+ Sbjct: 953 LISQGCDVAQGYLFSRPMSADALENWVRD 981 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/438 (44%), Positives = 271/438 (61%), Gaps = 3/438 (0%) Query: 554 EREASRARIHQLAFYDSLTGLPNRSLLLVQAGQAIATAERDHNTVAVMFIDLDRFKQVND 613 ER+A A + A +D+LTGLPNR++L +A+ A + AV F+DLD+FK +ND Sbjct: 254 ERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQFKFIND 313 Query: 614 SLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVL-TQYEPEH-LADVVKRVQER 671 SLGHQ GDELL+TVA RLQ+ R +D+V R GDEFV+VL Q E E +A+V++R+ Sbjct: 314 SLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVMQRILAA 373 Query: 672 LAMPCHINGTPLNPSASIGVALFPTNGHDIETLLHRADIAMYQAKAVNRGRFSFFSEEMN 731 +A P +ASIGV+ +P +G D+E+LL AD AMY+AK R F FF+ M+ Sbjct: 374 VARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFFAPWMD 433 Query: 732 SLAQERLALESALRDALRSGDLELHFQPQINLHDRSLYGVEALARWHDAQLGQISPGRFI 791 S RL + LR AL + +L++QP+++L D L G EAL RW Q G + P RFI Sbjct: 434 SQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVPPDRFI 493 Query: 792 PIAEQCGLIGELGKWALEEACFQLSDWRRRGIQIPTISVNLSATNFHDLELPQFVTGLLR 851 P AE+ GLI +G+W L AC Q W++ G+ ++VNLS + LP FV G+L Sbjct: 494 PFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLNQ-SLPDFVAGVLA 552 Query: 852 RYNLVSTDLTLEITETVLMDTNPSTSQTISAVHALGIPLAMDDFGTGYSSLGYLRKLPVS 911 + L ++ L LEITE V+M + T+ A+ LG+ +++DDFGTGYSSL YLR+ PV Sbjct: 553 QSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPVD 612 Query: 912 ELKLDQSFVRDMAKDEAVSALTNAVIRIGESLKLTVVAEGVEDADQYRLLVSQGCDVAQG 971 LK+D+SFVRD+ +D +A+ A+I + L L V+AEGVED +Q+ L CD QG Sbjct: 613 ALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENACDEVQG 672 Query: 972 YYFSRPMSAHQLEGWVRE 989 YYF +PM W+ E Sbjct: 673 YYFGKPMEVAVFTAWMSE 690 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust. Identities = 213/632 (33%), Positives = 336/632 (53%), Gaps = 13/632 (2%) Query: 365 WISAVTNPILDAAGRLINA--------VCVMTDITNTKVHEVLQY---RVLNAMARDASL 413 W++ N I+ L A ++ DI+ K E+LQ RVL+ + D L Sbjct: 457 WVTVRRNKIIHTDVTLNRAEFERGYAIFAILRDISARKRAELLQSEQNRVLHMVMADDEL 516 Query: 414 PEQMSLLCEEVERVAPEVIASVLRVDEQG-RLHTLAAPSLPDIYTRAIEGLQIGPLVGAC 472 + + + P SV+ V+EQ ++ + P RA++G+ I G Sbjct: 517 DGVLYEIVNFADAQIPYGACSVMLVNEQASHFTSVLSHRYPPRLIRALQGMPIRHGCGVG 576 Query: 473 GSAAFTGEAVISEDIASDPRWSEFKELALDHGLHACWSTPIKSADGKVIGTFGFYFRQPR 532 AA I +IA DP + L +C + PI +G+++G F ++ + Sbjct: 577 AEAALRRGPCIVANIAQDPITEHLRPLIDTEIYPSCGAWPIIGKEGQLLGVFAALLKENQ 636 Query: 533 QPSAFHHLLVDAGLHLCALAIEREASRARIHQLAFYDSLTGLPNRSLLLVQAGQAIATAE 592 PS + L + L ++AIE + RI LA YD LTGLPNR L AI AE Sbjct: 637 APSNEYLQLANIAADLASVAIESRRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAE 696 Query: 593 RDHNTVAVMFIDLDRFKQVNDSLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVV 652 + VAV+ +DLDRFK +ND+ GH+ G+ +L+ +A R ++ R DI+ R+ GDEF+V+ Sbjct: 697 HRNGMVAVILMDLDRFKNINDTFGHETGEAVLQEIAQRFRNSLRELDILARVGGDEFIVL 756 Query: 653 LTQYE-PEHLADVVKRVQERLAMPCHINGTPLNPSASIGVALFPTNGHDIETLLHRADIA 711 + ++ P L ++ +++ P I+G S SIG+A +P +G + +TL+ ADIA Sbjct: 757 VDDFDDPVQLGEIAQKLLTEARKPFIIDGQEAMLSVSIGIATYPGDGDNAQTLIKNADIA 816 Query: 712 MYQAKAVNRGRFSFFSEEMNSLAQERLALESALRDALRSGDLELHFQPQINLHDRSLYGV 771 MY+AK + + FFS+E+N+ ER+ALE+ LR A+ + +H+QP+I L + + G Sbjct: 817 MYRAKHHGKDDYRFFSDEINTNTVERIALEAELRRAIERAEFVVHYQPKIELAEGRIVGA 876 Query: 772 EALARWHDAQLGQISPGRFIPIAEQCGLIGELGKWALEEACFQLSDWRRRGIQIPTISVN 831 EAL RW G + PG FI +AE+ LI ++G L+ AC + R++ + IS+N Sbjct: 877 EALVRWQHPLRGLLPPGEFITLAEETRLIDQIGLLVLDVACRDIGLMRQQQMTCGRISIN 936 Query: 832 LSATNFHDLELPQFVTGLLRRYNLVSTDLTLEITETVLMDTNPSTSQTISAVHALGIPLA 891 L+ + F D L + ++ R+ + L EITE+++M + + A G ++ Sbjct: 937 LTGSQFGDERLLDDIKEVVDRHGTPPSCLEFEITESMVMHNRERAIAIMDGIRAEGFTIS 996 Query: 892 MDDFGTGYSSLGYLRKLPVSELKLDQSFVRDMAKDEAVSALTNAVIRIGESLKLTVVAEG 951 +DDFGTGYSSL YL++ PV+ LK+D+SF+ D+ + SA+ A+I + +L L VV EG Sbjct: 997 IDDFGTGYSSLAYLKRFPVNTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEG 1056 Query: 952 VEDADQYRLLVSQGCDVAQGYYFSRPMSAHQL 983 VE Q + L G D QGYYFS+P+ Q Sbjct: 1057 VETEKQLQALREFGSDEYQGYYFSKPVPYAQF 1088 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 350 bits (899), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 186/425 (43%), Positives = 260/425 (61%), Gaps = 1/425 (0%) Query: 569 DSLTGLPNRSLLLVQAGQAIATAERDHNTVAVMFIDLDRFKQVNDSLGHQAGDELLRTVA 628 D+LTGL NR +L QAI AER + V+F+DLDRFK VND+LGH+AGD LLRTVA Sbjct: 522 DTLTGLINRHMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVA 581 Query: 629 TRLQSQARRSDIVGRLSGDEFVVVLTQYEPEHL-ADVVKRVQERLAMPCHINGTPLNPSA 687 RL++ R +D V RL GDEF+++L + + L ++R+ + +A P + G L + Sbjct: 582 GRLRAAVREADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTC 641 Query: 688 SIGVALFPTNGHDIETLLHRADIAMYQAKAVNRGRFSFFSEEMNSLAQERLALESALRDA 747 S+GVA +P +G D ETL+ ADIAMY+ K R F F++ MN A ERL +E LR+A Sbjct: 642 SVGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNA 701 Query: 748 LRSGDLELHFQPQINLHDRSLYGVEALARWHDAQLGQISPGRFIPIAEQCGLIGELGKWA 807 L G+ LH+QP+++L + G EAL RW QLG +SP RFI +AE+ GLI +G W Sbjct: 702 LDHGEFLLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWV 761 Query: 808 LEEACFQLSDWRRRGIQIPTISVNLSATNFHDLELPQFVTGLLRRYNLVSTDLTLEITET 867 L AC Q W+ G ++SVNLS F +L + +L L L LE+TE+ Sbjct: 762 LRAACTQCRQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTES 821 Query: 868 VLMDTNPSTSQTISAVHALGIPLAMDDFGTGYSSLGYLRKLPVSELKLDQSFVRDMAKDE 927 ++M ++ + LG+ L++DDFGTGYSSL YL++ P+ LK+D+SFVRD+ D Sbjct: 822 LMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDA 881 Query: 928 AVSALTNAVIRIGESLKLTVVAEGVEDADQYRLLVSQGCDVAQGYYFSRPMSAHQLEGWV 987 +A+T ++I + LKL V+AEGVE +Q L GCD QGY FS P+ A + E + Sbjct: 882 DDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQIL 941 Query: 988 REYRC 992 R+ R Sbjct: 942 RQDRV 946 >gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1036 Score = 330 bits (845), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 177/444 (39%), Positives = 258/444 (58%), Gaps = 8/444 (1%) Query: 554 EREASRARIHQLAFYDSLTGLPNRSLLLVQAGQAIATAERDHNTVAVMFIDLDRFKQVND 613 +R+ + RI +LAF+D+LT LPNR+LLL + QAIA + R A++FIDLD FK +ND Sbjct: 587 DRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTKTCAALLFIDLDHFKTLND 646 Query: 614 SLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVL------TQYEPEHLADVVKR 667 ++GH+ GD LL+ VA RL + R +D V R+ GDEFVVVL Q + ++ Sbjct: 647 TIGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNELQQEAATQTRAIGEK 706 Query: 668 VQERLAMPCHINGTPLNPSASIGVALFPTNGHDIETLLHRADIAMYQAKAVNRGRFSFFS 727 + L ++ +ASIG +F ++ L+ +AD+AMY+AK R FF Sbjct: 707 ILTALGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFD 766 Query: 728 EEMNSLAQERLALESALRDALRSGDLELHFQPQINLHDRSLYGVEALARWHDAQLGQISP 787 M + ER LE+ LR A+ L LH+QPQ+ R + G E L RW Q G + P Sbjct: 767 PAMQTAVLERATLEAGLRKAIDGNQLLLHYQPQVVEGGR-VTGAEVLVRWQHPQRGMVPP 825 Query: 788 GRFIPIAEQCGLIGELGKWALEEACFQLSDWRRR-GIQIPTISVNLSATNFHDLELPQFV 846 G FIP+AE+ GLI LG W LE AC QL+ W + + +I+VN+SA + + Q V Sbjct: 826 GDFIPLAEETGLILSLGNWVLETACRQLATWAAQPQMADLSIAVNVSAPQLREPDFVQTV 885 Query: 847 TGLLRRYNLVSTDLTLEITETVLMDTNPSTSQTISAVHALGIPLAMDDFGTGYSSLGYLR 906 + R L LE+TE++L+D Q + A+ A G+ ++DDFGTGYSSL YL+ Sbjct: 886 LDTIERTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLK 945 Query: 907 KLPVSELKLDQSFVRDMAKDEAVSALTNAVIRIGESLKLTVVAEGVEDADQYRLLVSQGC 966 +LP+++LK+DQSFVRD+ D +++ ++ + +SL L V+AEGVE Q L GC Sbjct: 946 RLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGC 1005 Query: 967 DVAQGYYFSRPMSAHQLEGWVREY 990 QGY+F RP++ E + +E+ Sbjct: 1006 HAYQGYFFCRPVTVEAFEKFAQEF 1029 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,159,305 Number of extensions: 134926 Number of successful extensions: 531 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 466 Number of HSP's successfully gapped: 44 Length of query: 1001 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 906 Effective length of database: 1,170,045 Effective search space: 1060060770 Effective search space used: 1060060770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)