BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0697.p (633 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis tra... 1128 0.0 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 369 e-103 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 364 e-101 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 362 e-101 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 362 e-101 >gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 657 Score = 1128 bits (2918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 575/633 (90%), Positives = 607/633 (95%) Query: 1 MTVALVGIVFVIALMLITYSASRMVERSSVEQMNHDARGVADMVGLFDRSVNSQVDRFST 60 MTVALVGIVFVIAL+LITYSASRM+E+ SVEQM +D RG+A+MVGLFDRSVNSQVDRFST Sbjct: 25 MTVALVGIVFVIALLLITYSASRMIEQRSVEQMRNDTRGIANMVGLFDRSVNSQVDRFST 84 Query: 61 MFDKEFGKLNLDESRTVQIGDRATPVLSNDGRELNLDFSLPDRFTARTGVTATIFAKTGE 120 MFD EFGKL+LDE+RTVQIG+RATPVL NDG ELNLDFS+PDRFTA+TGVTATIFAKTGE Sbjct: 85 MFDSEFGKLSLDETRTVQIGERATPVLQNDGHELNLDFSIPDRFTAKTGVTATIFAKTGE 144 Query: 121 DFVRVSTSVKKENGERAIGTLLDRNHPGYAALKSDKAYSGLATLFGKQYITKYVPIKNDA 180 DFVR+STSVKKENGERAIGTLLDR+HPGYAALKSDKAYSGLATLFGKQYITKYVP+KN+A Sbjct: 145 DFVRISTSVKKENGERAIGTLLDRSHPGYAALKSDKAYSGLATLFGKQYITKYVPVKNNA 204 Query: 181 GQIIAALYVGIDISADVKALKDQIKSLKIGATGNFFALNGREGKDQGVMIAGAAREGKEE 240 GQIIAALYVGIDIS+D+KALKDQIK+LKIG TGNFFALN REGKD GVMIAGAAREGKEE Sbjct: 205 GQIIAALYVGIDISSDIKALKDQIKALKIGDTGNFFALNAREGKDLGVMIAGAAREGKEE 264 Query: 241 GGNLLEAKDASGDTYIKTLVQQKQGELRYTAADGRKKIAVFTHYAPWNWVIVGEAAVDEI 300 G +LLE KDA+GDTYIKT++QQK G L YTAADGRKKI FT+Y W+WVI GEAAVDEI Sbjct: 265 GSSLLELKDAAGDTYIKTMLQQKDGSLPYTAADGRKKILAFTYYPGWHWVIAGEAAVDEI 324 Query: 301 TSEVNDMRNLYVGLGLLFLAVLAVILTVMINRMVTRPLDAVCQAADRIAGGDLTTRLHVH 360 T EV+ MRNLY+GLGLLFLAVLA ILTVM+NRMV+RPLDAVCQAADRIA GDLTTRLHVH Sbjct: 325 TREVSSMRNLYIGLGLLFLAVLAAILTVMVNRMVSRPLDAVCQAADRIASGDLTTRLHVH 384 Query: 361 SSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEE 420 SSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIA+GNLNLS RTEQQAGALEE Sbjct: 385 SSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIASGNLNLSVRTEQQAGALEE 444 Query: 421 TASAMEELTSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDI 480 TASAMEELTSTVKQNAANA QADEL+ +ASEVASHGGEVVGQVVQTMDAINSSSQRIVDI Sbjct: 445 TASAMEELTSTVKQNAANAEQADELSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDI 504 Query: 481 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDAS 540 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDAS Sbjct: 505 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDAS 564 Query: 541 VQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDEST 600 VQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDEST Sbjct: 565 VQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDEST 624 Query: 601 QQNAALVEQAAAAAQSLQQQAERLAAAVSTFRV 633 QQNAALVEQAAAAAQSLQQQAERLAAAVSTFR+ Sbjct: 625 QQNAALVEQAAAAAQSLQQQAERLAAAVSTFRI 657 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 369 bits (947), Expect = e-103, Method: Compositional matrix adjust. Identities = 211/325 (64%), Positives = 257/325 (79%), Gaps = 1/325 (0%) Query: 310 LYVGLGLLFLAVLA-VILTVMINRMVTRPLDAVCQAADRIAGGDLTTRLHVHSSDEIGRL 368 + V L AVLA +IL ++ R + +PL + A+ +A GDLTTR+ HS DE G+L Sbjct: 192 IEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQL 251 Query: 369 MGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEETASAMEEL 428 M A ++ L E+VS VR GTE I TA+ EIA+GNL+LSARTEQQAG+LEETASAMEE+ Sbjct: 252 MQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEM 311 Query: 429 TSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIA 488 TSTV+QNA NA QA+++A SASE+A GG++VG+VV TMD IN SS++IVDII VIDGIA Sbjct: 312 TSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIA 371 Query: 489 FQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGG 548 FQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAAAKEIK LI SV V GG Sbjct: 372 FQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGS 431 Query: 549 QLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVE 608 LV QAG TM VVSSV+ V+ +++EI+ AS EQS GI++INRA+ QMDE TQQNAALVE Sbjct: 432 ALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVE 491 Query: 609 QAAAAAQSLQQQAERLAAAVSTFRV 633 QAAAAA+S+Q+QA RL ++S F++ Sbjct: 492 QAAAAAKSMQEQAVRLTQSISIFKL 516 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust. Identities = 222/393 (56%), Positives = 281/393 (71%), Gaps = 17/393 (4%) Query: 241 GGNLLEAKDASGDTYIKTLVQQKQGELRYTAADGRKKIAVFTHYAPWNWVIVGEAAVDEI 300 G+ A++ + T +K + G LRY AD +K++ T A I Sbjct: 136 AGDDARAREMTDTTLVKMMDDYADGVLRY--ADFQKQVIDQTAAA--------------I 179 Query: 301 TSEVNDMRNLYVGLGLLFLAVLAVILTVMINRMVTRPLDAVCQAADRIAGGDLTTRLHVH 360 + R++ + LG + + VL L ++ R +TRPL+ A+ +A GDLT+R+ Sbjct: 180 NRDYRSGRSMLLALGAIEI-VLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSS 238 Query: 361 SSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEE 420 S DE G+L+ A ++ L ++V VR GTE INTA+ EIA GNL+LSARTE QAG+LEE Sbjct: 239 SRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEE 298 Query: 421 TASAMEELTSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDI 480 TASAME+LTSTVKQNA NA QA+ELA SAS+VA+ GG VV QVV TM AI++SSQ+I DI Sbjct: 299 TASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADI 358 Query: 481 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDAS 540 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK+LID S Sbjct: 359 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDS 418 Query: 541 VQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDEST 600 V+ V G +LV +AG+TM +VV SV RV+ V+ EIT AS+EQS+GI+Q+N AI +DE+T Sbjct: 419 VEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETT 478 Query: 601 QQNAALVEQAAAAAQSLQQQAERLAAAVSTFRV 633 QQNAALVEQAAAAA+S+Q QA L AVS FR+ Sbjct: 479 QQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 362 bits (928), Expect = e-101, Method: Compositional matrix adjust. Identities = 213/337 (63%), Positives = 267/337 (79%), Gaps = 2/337 (0%) Query: 298 DEITSEVNDMRNLYVGLGLLF-LAVLAVILTVMINRMVTRPLDAVCQAADRIAGGDLTTR 356 D++ +V L++ +GLL + V+A+ L VM+ R V+RPL+ A+R+A GDLT Sbjct: 179 DDMAEQVYRSATLWI-IGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMD 237 Query: 357 LHVHSSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAG 416 + S+DE G LM + ++ L ++V VR GT+ I TA+ EIA GNL+LS+RTE+QAG Sbjct: 238 IRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAG 297 Query: 417 ALEETASAMEELTSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQR 476 +LEETASAMEELT+TVKQNA NA QA++LA SAS++A+ GG VVGQVVQTM+ I SS R Sbjct: 298 SLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNR 357 Query: 477 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKEL 536 I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK+L Sbjct: 358 IADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQL 417 Query: 537 IDASVQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQM 596 ID SV+ V G QLV +AG TM++VV+SV+RV+ V++EI+ AS EQS GI++INRAI QM Sbjct: 418 IDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQM 477 Query: 597 DESTQQNAALVEQAAAAAQSLQQQAERLAAAVSTFRV 633 DE TQQNAALVE+AAAAAQSLQ QA RL+ VS F++ Sbjct: 478 DEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 362 bits (928), Expect = e-101, Method: Compositional matrix adjust. Identities = 216/342 (63%), Positives = 261/342 (76%), Gaps = 2/342 (0%) Query: 293 GEAAVDEITSEVNDMRNLYVGLGLLFLAVL-AVILTVMINRMVTRPLDAVCQAADRIAGG 351 G A DE S V ++ +GLL VL A +L ++ V+RPL Q A R+A G Sbjct: 174 GSAQADEEASTVFRGAQRWI-VGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARG 232 Query: 352 DLTTRLHVHSSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSART 411 DLT R+ DE G LM A ++ L ++VS VR GT+ I TA+ EIA GNL+LS RT Sbjct: 233 DLTLRIRPAGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRT 292 Query: 412 EQQAGALEETASAMEELTSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAIN 471 EQQAG+LEETASAMEELTSTV QNA NA QA++LA +AS++AS GGEVVGQVVQTM+ I Sbjct: 293 EQQAGSLEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGIT 352 Query: 472 SSSQRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAK 531 SS+RI DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAK Sbjct: 353 ESSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAK 412 Query: 532 EIKELIDASVQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINR 591 EIKELID SVQ V+ G LV +AG+TM +VV+SV+RV+ V++EI+ A++EQS GI+++N Sbjct: 413 EIKELIDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNL 472 Query: 592 AIAQMDESTQQNAALVEQAAAAAQSLQQQAERLAAAVSTFRV 633 AI QMDE+TQQNAALVEQAAAAA SL+ QA LAA V F++ Sbjct: 473 AITQMDETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,485,359 Number of extensions: 54620 Number of successful extensions: 605 Number of sequences better than 1.0e-08: 72 Number of HSP's gapped: 350 Number of HSP's successfully gapped: 74 Length of query: 633 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 542 Effective length of database: 1,188,985 Effective search space: 644429870 Effective search space used: 644429870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)