BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0696.p
         (645 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310168|ref|YP_003774260.1| DNA mismatch repair protein [He...  1116   0.0  

>gi|300310168|ref|YP_003774260.1| DNA mismatch repair protein
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score = 1116 bits (2887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/632 (91%), Positives = 593/632 (93%), Gaps = 6/632 (0%)

Query: 14  PSYRPIQALPDQLISQIAAGEVIERPSAVVKELLENAIDAGSTQITVRLEQGGVKRIAIT 73
           PSYRPIQALPDQLISQIAAGEVIERPSAVVKELLENA+DAGSTQITVRLEQGGVKRIAIT
Sbjct: 2   PSYRPIQALPDQLISQIAAGEVIERPSAVVKELLENALDAGSTQITVRLEQGGVKRIAIT 61

Query: 74  DNGRGIPPDQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTADA 133
           DNGRGIPP+QLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTADA
Sbjct: 62  DNGRGIPPEQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTADA 121

Query: 134 PHAWEITGSQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIAL 193
           PHAWEITGSQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIAL
Sbjct: 122 PHAWEITGSQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIAL 181

Query: 194 ARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGLPT 253
           ARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGLPT
Sbjct: 182 ARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGLPT 241

Query: 254 ASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPSYALSLTLDPALVDVNVHP 313
           ASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYP+YALSLTLDPALVDVNVHP
Sbjct: 242 ASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPAYALSLTLDPALVDVNVHP 301

Query: 314 SKIEVRFRDSRAVHQFVFHAVSRTLAQTSAVSFGNLPQQPGEASEELAVQPAATGPNAPL 373
           SKIEVRFRDSRAVHQFVFHAVSR LAQTSAVSFGNLP    ++ +     P A   NAPL
Sbjct: 302 SKIEVRFRDSRAVHQFVFHAVSRALAQTSAVSFGNLPGAAPQSDDSAGAPPPAA--NAPL 359

Query: 374 PWTREQKQQSFSAQFAEQPRPFSFGGNSGFGIRQDRAAYGNMFRNEPTSDADGGAATRGT 433
           PW  EQ+QQSFSAQFAE PRPFSFGGNSGFG+RQ+  AYG+MFR+ PTS    G+A    
Sbjct: 360 PWIGEQQQQSFSAQFAEAPRPFSFGGNSGFGVRQNTEAYGSMFRSAPTSGEPDGSAPAAY 419

Query: 434 ADQFSSAPAPVAAPLPEGDFPLGFALAQLHGIYVLAQNQAGLVVVDMHAAHERILYEQLK 493
               ++APA +     EGDFPLGFALAQLHGIYVLAQNQAGLVVVDMHAAHERILYEQLK
Sbjct: 420 GATPAAAPAALP----EGDFPLGFALAQLHGIYVLAQNQAGLVVVDMHAAHERILYEQLK 475

Query: 494 TALDGNEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVMSPTTLAVRAVPALL 553
           TALDGNEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVMSPTTLAVRAVPALL
Sbjct: 476 TALDGNEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVMSPTTLAVRAVPALL 535

Query: 554 KNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANRSLTLPEMNALLRQM 613
           KNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANRSLTLPEMNALLRQM
Sbjct: 536 KNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANRSLTLPEMNALLRQM 595

Query: 614 EATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ 645
           EATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ
Sbjct: 596 EATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ 627


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,967,256
Number of extensions: 81831
Number of successful extensions: 283
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 554
Effective length of database: 1,188,985
Effective search space: 658697690
Effective search space used: 658697690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)