BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0693.p
         (406 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310065|ref|YP_003774157.1| N-acyl-D-glucosamine 2-epimeras...   623   e-180

>gi|300310065|ref|YP_003774157.1| N-acyl-D-glucosamine 2-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  623 bits (1607), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/394 (76%), Positives = 326/394 (82%)

Query: 11  MSHPDFASRRFLQAHVADTLAFYDRHAIDPQGGFFHYLKDDGSVYEHSHRHLVSATRLVF 70
           M  PDF SRRFL AHVADTLAFYDRHAIDP GGFFHYLKD+G VY   HRHLVSATRLVF
Sbjct: 1   MPQPDFESRRFLHAHVADTLAFYDRHAIDPLGGFFHYLKDNGRVYNAGHRHLVSATRLVF 60

Query: 71  TQAMAYTHTGQPRYLQQARHALAHLERFRHRQGPLAGLYAWTLRDDRIEDGTVMAYGQAF 130
           TQ MAYTH+G  RYL+QAR A   L RFRH  GPL GLYAWTL+D+RIED TVMAYGQAF
Sbjct: 61  TQTMAYTHSGHTRYLRQARRAWDELARFRHASGPLQGLYAWTLQDERIEDATVMAYGQAF 120

Query: 131 VLLAQAHAHRIGLCDAEQVAQAFARMESAFFEPAHAAYADEITAAGELIAYRGQNANMHM 190
           VLLA AHAHRIGLC  + VA AF RME+AFFEPAH AYADEIT AGELI YRGQNANMHM
Sbjct: 121 VLLACAHAHRIGLCGEDAVADAFERMETAFFEPAHQAYADEITPAGELIGYRGQNANMHM 180

Query: 191 CEACLAAYAATGRALYLERAQLLIERFVFDLARQSQDMVWEHYRADWSLDHDYNRGNRDN 250
           CEACL+AY  TG+  YLERA  LIERFVFDLA+ +Q +VWEHY  DW+ D DYN+G R N
Sbjct: 181 CEACLSAYEVTGQRRYLERALALIERFVFDLAQHTQGLVWEHYHQDWTPDLDYNKGKRSN 240

Query: 251 IFKPWGFQTGHQTEWAKLLLIAHGHEPRPEYIARAAELQTAAWEHGWDAQHGGLIYGFDP 310
           IFKPWGFQTGHQTEWAKLLLIAHGH P   ++ RA EL  AAW +GWD+ HGGLIYGF  
Sbjct: 241 IFKPWGFQTGHQTEWAKLLLIAHGHAPNAAFLPRAIELHQAAWTYGWDSIHGGLIYGFGL 300

Query: 311 ALQPYDSDKYFWVQAESFASAWRLWRVTGEERFRAQYHAIWAWSWAHLVDHQYGAWFRIL 370
             +PYD DKYFWVQAESFASAWRLWR TGE  FR QY  +WAWSW H+VDH++GAWFRIL
Sbjct: 301 EREPYDRDKYFWVQAESFASAWRLWRATGEPAFRDQYRMLWAWSWQHMVDHEHGAWFRIL 360

Query: 371 AADGSKLEDTKSPAGKVDYHTMGACWDVMEAGGL 404
           AADGSKLEDTKSPAGKVDYHTMGACWDV+  GGL
Sbjct: 361 AADGSKLEDTKSPAGKVDYHTMGACWDVLAVGGL 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,488,531
Number of extensions: 66255
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 319
Effective length of database: 1,207,925
Effective search space: 385328075
Effective search space used: 385328075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)