BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0689.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310061|ref|YP_003774153.1| panthothenate kinase [Herbaspir...   317   4e-88

>gi|300310061|ref|YP_003774153.1| panthothenate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  317 bits (812), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 178/204 (87%)

Query: 2   IPAVFRDRLAALLASGQRTLLGIAGPPGSGKSTLAQALLELVPDQAVVLPMDGYHLANAE 61
           + AV+RDR+ ALLASGQR +LGIAG PGSGKSTLAQALLE   ++AVVLPMDGYHLANAE
Sbjct: 1   MSAVYRDRVQALLASGQRKILGIAGAPGSGKSTLAQALLEQAGERAVVLPMDGYHLANAE 60

Query: 62  LARLGRAARKGAEDTFDSAGYVHLLSRLRRQAPDETVYAPQFLREIEEAIAGSIGIAPAT 121
           LARLGRAARKGAEDTFDSAGYV LLSRLR Q  DE +YAPQFLREIEEA+AG+I I P+T
Sbjct: 61  LARLGRAARKGAEDTFDSAGYVALLSRLRSQGGDELIYAPQFLREIEEAVAGAIPIPPST 120

Query: 122 RLIITEGNYLLLDRGHWSQVRALLDEVWYVDVDPALRLERLIARHVQFGRSRAQAEAWVL 181
           +LIITEGNYLLLDRGHW++VR LLDE WY++VDP LR++RLIARHVQFGR+   A AWV+
Sbjct: 121 QLIITEGNYLLLDRGHWARVRPLLDECWYLEVDPTLRVQRLIARHVQFGRTPEAARAWVM 180

Query: 182 GSDEVNAALIETTRGHADRIFRWD 205
            SDE NAALIETTR  AD IFRWD
Sbjct: 181 DSDEANAALIETTRPRADLIFRWD 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,517
Number of extensions: 22252
Number of successful extensions: 256
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)