BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0685.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310057|ref|YP_003774149.1| phosphate starvation-inducible ...   700   0.0  
gi|300311398|ref|YP_003775490.1| phosphate starvation-inducible ...   107   2e-24

>gi|300310057|ref|YP_003774149.1| phosphate starvation-inducible
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 373

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/372 (96%), Positives = 367/372 (98%), Gaps = 1/372 (0%)

Query: 1   LKKIPNQPHHFTPQPLDNKRLANLCGALDENLRQISAALDVTIFRRGDRFVVTGTNAERA 60
           +KKIPNQPHHFTPQPLDNKRLANLCGALDENLRQISAALDVTIFRRGDRF+VTGTNAERA
Sbjct: 1   MKKIPNQPHHFTPQPLDNKRLANLCGALDENLRQISAALDVTIFRRGDRFIVTGTNAERA 60

Query: 61  VEVLERFYEKADRPVAVDDIQLALVEQRANAAADEEAGLPPLPARRGKAAAAAAEE-EKD 119
           VEVLERFY+KADRPVAVDDIQLALVEQRANAAADEEAGLPPLPARRGKAA AAA E +KD
Sbjct: 61  VEVLERFYDKADRPVAVDDIQLALVEQRANAAADEEAGLPPLPARRGKAAVAAAVEEDKD 120

Query: 120 SQDPLPESPILKTRKHDLRGRTPHQSQYLNAILEHDITFGVGPAGTGKTYLAVACAVDAL 179
           SQDPLPESP+LKTRKHDLRGRTPHQSQYLNAILEHDITFGVGPAGTGKTYLAVACAVDAL
Sbjct: 121 SQDPLPESPVLKTRKHDLRGRTPHQSQYLNAILEHDITFGVGPAGTGKTYLAVACAVDAL 180

Query: 180 ERDAVQRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDRTQKLFEKQA 239
           ERDAVQRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDRTQKLFEKQA
Sbjct: 181 ERDAVQRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDRTQKLFEKQA 240

Query: 240 IEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVITGDVTQVDLHHGQ 299
           IEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVITGDVTQVDLHHGQ
Sbjct: 241 IEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVITGDVTQVDLHHGQ 300

Query: 300 KSGLVDALSVLHDVRGIAFSRFTSADVVRHPLVARIVDAYDAAGNVRPDTTRATARTATN 359
           KSGLVDA+SVLH+VRGIAFSRFTSADVVRHPLVARIVDAYDAAGN +PDT RATARTATN
Sbjct: 301 KSGLVDAISVLHEVRGIAFSRFTSADVVRHPLVARIVDAYDAAGNSKPDTARATARTATN 360

Query: 360 LLTKSAKPRHAK 371
           LLTKSAKPRHAK
Sbjct: 361 LLTKSAKPRHAK 372


>gi|300311398|ref|YP_003775490.1| phosphate starvation-inducible
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 566

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 94/176 (53%), Gaps = 13/176 (7%)

Query: 131 KTRKHDLRGRTPHQSQYLNAIL--EHDITFGVGPAGTGKTYLAVACAV-DALERDAVQRI 187
           K     +  R   Q+  LN ++  E D    +G AGTGKT LA+A  +   LE      I
Sbjct: 347 KNSVWGITARNREQNFALNLLMNPECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEI 406

Query: 188 VLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDL---------LGFDRTQKLFEKQ 238
           ++TR  V  GE +GFLPG   +K+ P++    D L  L          G   TQ L  + 
Sbjct: 407 IVTRVTVPVGEDIGFLPGTEEEKMGPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLI-RS 465

Query: 239 AIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVITGDVTQVD 294
            I+I  L +MRGRT  + F+I+DEAQN TP+QMK  +TR G G+K V  G++ Q+D
Sbjct: 466 RIKIKSLNFMRGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQID 521


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,121,807
Number of extensions: 47124
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)