BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0680.p
         (706 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310051|ref|YP_003774143.1| glycyl-tRNA synthetase beta cha...  1307   0.0  

>gi|300310051|ref|YP_003774143.1| glycyl-tRNA synthetase beta chain
           protein [Herbaspirillum seropedicae SmR1]
          Length = 706

 Score = 1307 bits (3383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/706 (95%), Positives = 689/706 (97%)

Query: 1   MNQTLLVELVTEELPPKALAKLGDAVANGIFNGLQSRGYLEADAVATAYATPRRLAVSIS 60
           MNQTLLVELVTEELPPKALAKLGDA A GIFNGLQSRGYL+ADA ATAYATPRRLAVSI+
Sbjct: 1   MNQTLLVELVTEELPPKALAKLGDAFATGIFNGLQSRGYLDADATATAYATPRRLAVSIT 60

Query: 61  KVRAASPDKSIREKVLPVSVALDAEGRPSAPLVKKLAALAASTGATVITPDQLERAQDGK 120
           +V AASPDKSIREKVLPVSVALDAEGRPSAPLVKKLAALAASTGATVITPDQLERAQDGK
Sbjct: 61  QVCAASPDKSIREKVLPVSVALDAEGRPSAPLVKKLAALAASTGATVITPDQLERAQDGK 120

Query: 121 AESFFYTYTAKGSALAVGLQAALDESLSKLPIPKVMSYQRQFGRAAGETVHFVRPAHYLV 180
           AESFFYTYTAKGSALAVGLQAALDESLSKLPIPKVMSYQRQFGRAAGETVHFVRPAHYLV
Sbjct: 121 AESFFYTYTAKGSALAVGLQAALDESLSKLPIPKVMSYQRQFGRAAGETVHFVRPAHYLV 180

Query: 181 ALFGNDVVPINTLGLDAGRTTLGHRFLSSGALQIASPDAYVEALATQGKVIASFTERREK 240
           AL GNDVVPINTLGLDAGRTTLGHRFLS+GALQIA+PDAYVE+LA QG VIASFTERREK
Sbjct: 181 ALLGNDVVPINTLGLDAGRTTLGHRFLSAGALQIAAPDAYVESLAQQGNVIASFTERREK 240

Query: 241 IRAALLAKAGADQVLMPESLLDEVTALVEWPVVYECKFEDEFLAVPQECLILTMQTNQKY 300
           IRAALLAKAGADQVLMPE+LLDEVTALVEWPVVYECKFEDEFLAVPQECLILTMQTNQKY
Sbjct: 241 IRAALLAKAGADQVLMPEALLDEVTALVEWPVVYECKFEDEFLAVPQECLILTMQTNQKY 300

Query: 301 FALTDANGRLRSRFLIVSNLETDRPEHIIGGNERVVRPRLSDAKFFFEQDKKKTLAERVP 360
           FALTDANGRLRSRFLIVSNLET  PEHIIGGNERVVRPRLSDAKFFFEQDKKKTLAERVP
Sbjct: 301 FALTDANGRLRSRFLIVSNLETAHPEHIIGGNERVVRPRLSDAKFFFEQDKKKTLAERVP 360

Query: 361 QLANVVYHNKLGNQLQRTERVQALAGKIAALLGGDVTQAERGALLAKADLLTDMVGEFPE 420
           QLANVVYHNKLGNQLQRTERVQALAGKIA+LLGGDV  AERGALLAKADLLTDMVGEFPE
Sbjct: 361 QLANVVYHNKLGNQLQRTERVQALAGKIASLLGGDVKLAERGALLAKADLLTDMVGEFPE 420

Query: 421 LQGIMGTYYARHDGEPDEVALAASEHYQPRFAGDALPGTATGTAVALADKLETLVGIWGI 480
           LQGIMGTYYARHDGE DEVALAASEHYQPRFAGDALP TATGTAVALADKLETLVGIWGI
Sbjct: 421 LQGIMGTYYARHDGEADEVALAASEHYQPRFAGDALPTTATGTAVALADKLETLVGIWGI 480

Query: 481 GLQPTGDKDPFALRRHALGVLRMLVEKRLPLSLNALLEAAVALFAGNPNFKDPRAEVQAF 540
           GLQPTGDKDPFALRRHALGVLRMLVEKRLPLSL ALL+AA  LFAGN NFKDPRA+VQAF
Sbjct: 481 GLQPTGDKDPFALRRHALGVLRMLVEKRLPLSLTALLDAATGLFAGNANFKDPRADVQAF 540

Query: 541 IHDRLRGLLRERGFAQNEVEAVVAQQPDVLDNVVERLQAVQAFAALPEAEALAAANKRIT 600
           I+DRLRGLLRERGFAQNEVEAVVAQQP+VLDNVVERLQAVQAFAALPEAEALAAANKRIT
Sbjct: 541 IYDRLRGLLRERGFAQNEVEAVVAQQPEVLDNVVERLQAVQAFAALPEAEALAAANKRIT 600

Query: 601 NILKKIEGVAIDAHGAVQQNLLKEAAEQGLFAAMQTTRPQVEAAYAQGDFAGALKALAQL 660
           NILKKIEGVAIDAHGAVQ++LL+EAAEQGLFAAMQTTRPQVEAAYA+GDFAGALKALAQL
Sbjct: 601 NILKKIEGVAIDAHGAVQESLLQEAAEQGLFAAMQTTRPQVEAAYAKGDFAGALKALAQL 660

Query: 661 RQNVDAFFNDVMVNAEDEQLRKNRQALLAALHGMLNQVADISKLAA 706
           RQNVDAFFNDVMVNAEDEQLRKNRQALLAALHGMLNQVADISKLAA
Sbjct: 661 RQNVDAFFNDVMVNAEDEQLRKNRQALLAALHGMLNQVADISKLAA 706


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,953,593
Number of extensions: 79853
Number of successful extensions: 323
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 614
Effective length of database: 1,184,250
Effective search space: 727129500
Effective search space used: 727129500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)