BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0679.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310050|ref|YP_003774142.1| histidinol phosphatase [Herbasp...   365   e-103
gi|300313701|ref|YP_003777793.1| histidinol phosphatase [Herbasp...   117   6e-28

>gi|300310050|ref|YP_003774142.1| histidinol phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  365 bits (938), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/185 (97%), Positives = 180/185 (97%)

Query: 1   MKLIILDRDGVINQDSDAFIKSPDEWIPIKGSLEAIARLNQAGYRVVVATNQSGVARGLF 60
           MKLIILDRDGVINQDSDAFIKSPDEWIPIKGSLEAIARLNQAGYRVVVATNQSGVARGLF
Sbjct: 1   MKLIILDRDGVINQDSDAFIKSPDEWIPIKGSLEAIARLNQAGYRVVVATNQSGVARGLF 60

Query: 61  DIKTLNAIHQKMHNAAQQAGADIDAVFFCPHSADDNCDCRKPKPGMFHEIAKRFNISLRG 120
           DIKTLNAIHQKMH AAQQAGADIDAVFFCPHSADDNCDCRKPKPGMFHEIAKRFNISLRG
Sbjct: 61  DIKTLNAIHQKMHTAAQQAGADIDAVFFCPHSADDNCDCRKPKPGMFHEIAKRFNISLRG 120

Query: 121 GVATVGDSLRDLQAGYVAGCAPYLVLTGKGEKTQAKGGLPPGTLVFPDLSAVVDFILKSP 180
           GV TVGDSLRDLQAGYVAGCAP LVLTGKGEKTQAKGGLPPGTLVFPDLSAVVDFILK  
Sbjct: 121 GVVTVGDSLRDLQAGYVAGCAPCLVLTGKGEKTQAKGGLPPGTLVFPDLSAVVDFILKPV 180

Query: 181 VGVSV 185
           VGVSV
Sbjct: 181 VGVSV 185


>gi|300313701|ref|YP_003777793.1| histidinol phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 196

 Score =  117 bits (293), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 10/181 (5%)

Query: 4   IILDRDGVINQDSDAFIKSPD-EWIPIKGSLEAIARLNQAGYRVVVATNQSGVARGLFDI 62
           + +DRDG +N + +   +  D EWIP  GS+E + +L+ AG+  +V TNQ+GVARG +D 
Sbjct: 9   VFIDRDGTLNVEKNYLHRYEDWEWIP--GSVEMLMQLHAAGFLNIVVTNQAGVARGYYDE 66

Query: 63  KTLNAIHQKMHNAAQQAGADIDAVFFCPHSADD----NCDCRKPKPGMFHEIAKRFNISL 118
           + ++ +H ++     +A   IDA + CPH        +CDCRKP PGM     + +NI L
Sbjct: 67  QAISRLHAQVDAGMGEAAGCIDAYYHCPHHPLHGQVRDCDCRKPAPGMLLRAQREWNIDL 126

Query: 119 RGGVATVGDSLRDLQAGYVAGCAPYLVLTGKGEKTQAKGGLPPGTLVFPDLSAVVDFILK 178
                 VGD L D+QAG   G    LV TG G   + +   PPG L+  D +     IL+
Sbjct: 127 SRSW-MVGDKLSDIQAGLAVGARCVLVATGYGR--EERDHCPPGVLLADDFARAGALILR 183

Query: 179 S 179
            
Sbjct: 184 E 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 586,074
Number of extensions: 23027
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)