BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0678.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310049|ref|YP_003774141.1| 1-acyl-sn-glycerol-3-phosphate ...   486   e-139
gi|300309811|ref|YP_003773903.1| 1-acyl-sn-glycerol-3-phosphate ...    57   2e-09
gi|300312599|ref|YP_003776691.1| major facilitator superfamily p...    54   1e-08

>gi|300310049|ref|YP_003774141.1| 1-acyl-sn-glycerol-3-phosphate
           acyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  486 bits (1250), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/249 (93%), Positives = 242/249 (97%)

Query: 1   MGETILRLVLILRSLVFMVLMSVATVIWSFACLLSAPFPYPQRYWWTSRWNVFVIWTARV 60
           MGETILRLVLILRS+VFM LM+VAT+IWSFACLLSAPFPY QRYWWTSRWNVFVIWTARV
Sbjct: 1   MGETILRLVLILRSVVFMALMAVATIIWSFACLLSAPFPYAQRYWWTSRWNVFVIWTARV 60

Query: 61  ICGIRYEIRGAENLPDAPVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYIPFFGWGI 120
           ICGIRYEIRGAENLPDAPVILLSKHQSAWETIFYVINMPRPLVFVFKKELTY+PFFGWGI
Sbjct: 61  ICGIRYEIRGAENLPDAPVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYVPFFGWGI 120

Query: 121 ALLRMIPIDRKKGRDAFSQVLEHGRRRLRDGQWIVMFPEGTRTAVGSQGKYKAGGPRLAV 180
           ALLRMIPIDRKKGRDAF+QVLEHG RRLRDGQWI+MFPEGTRT VGSQGKYKAGG RLAV
Sbjct: 121 ALLRMIPIDRKKGRDAFAQVLEHGTRRLRDGQWIMMFPEGTRTTVGSQGKYKAGGSRLAV 180

Query: 181 ETNTLVVPIAMNSGQCWPKGSFIKQPGVITVSIGKPMSPEGLTAQELNERVENWIESEMR 240
           ETNTLVVPIAMNSGQCWPKGSFIK+PG+ITVSIGKP+SPEGL  QELNERVENWIESEMR
Sbjct: 181 ETNTLVVPIAMNSGQCWPKGSFIKKPGLITVSIGKPISPEGLNPQELNERVENWIESEMR 240

Query: 241 VISPDVYKN 249
           VISPDVYKN
Sbjct: 241 VISPDVYKN 249


>gi|300309811|ref|YP_003773903.1| 1-acyl-sn-glycerol-3-phosphate
           acyltransferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 266

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 91/217 (41%), Gaps = 16/217 (7%)

Query: 15  LVFMVLMSVATVIWSFA-CLLSAPFPYPQ-RYWWTSRWNVFVIWTARVICGIRYEIRGAE 72
            VF +L  +A +    A C    PF   Q R     RW+  ++     ICGI   IR   
Sbjct: 2   FVFRLLRLIAHLFKGMAVCAFLFPFTSQQGREAHIRRWSRKLLR----ICGI--AIRIDS 55

Query: 73  NLPDAPVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYIPFFGWGIALLRMIPIDRKK 132
            LP    +L+S H S W  IF V N  +P  FV K E+   P  GW  A    I I R K
Sbjct: 56  PLPIPRSLLVSNHVS-WLDIFAV-NSLQPCRFVAKSEIRSWPLIGWLCAKTGTIFISRGK 113

Query: 133 GRDAFSQVLEHGRRRLRDGQWIVMFPEGTRTAVGSQGKYKAGGPRLAVETNTLVVPIAMN 192
             D   ++ +     +   + +  FPEGT  A G+   + A     A++    V P A+ 
Sbjct: 114 ASDV-RRIFKGLVESIEKDEHVAFFPEGTTAAQGTLLPFHANLFEAAIDAKAPVQPYALR 172

Query: 193 ----SGQCWPKGSFIKQPGVITVSIGKPMSPEGLTAQ 225
               +GQ      FI +   I  SI   +   G+TA+
Sbjct: 173 YVDANGQLHAAADFIGEMS-IAESILTILKARGMTAE 208


>gi|300312599|ref|YP_003776691.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 28/189 (14%)

Query: 65  RYEIRGAENLPD-APVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYIPFFGWGIALL 123
           R  I   + +P+  P +L+  H S  + I  +   PRP+ FV   ++  IP   W    +
Sbjct: 443 RVRIINGQAIPEQGPAVLVCNHVSYVDAIAIMAASPRPVRFVMDHQIFRIPVMSWLFRNV 502

Query: 124 RMIPIDRKK-----GRDAFSQVLEHGRRRLRDGQWIVMFPEGTRTAVGSQGKYKAGGPRL 178
           R IPI   K        AF  +     + L +G+ + +FPEG  T  G    +K G  ++
Sbjct: 503 RAIPIAPVKEDPWLTEKAFVDI----AQALHEGELVCIFPEGKLTRDGELNPFKGGVQKI 558

Query: 179 AVETNTLVVPIAMNS--------------GQCWPKGSFIKQPGVITVSIGKPMSPEGLTA 224
              +   V+P+A+                 + + +G F +    + +++G+ + PE ++ 
Sbjct: 559 IARSPVPVLPMALRGLWGSLFSRDPSNPVARTFKRGLFSR----LELAVGEAIPPEQVSP 614

Query: 225 QELNERVEN 233
           + L E+V  
Sbjct: 615 ELLQEKVRE 623


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 778,518
Number of extensions: 31882
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 3
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)