BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0676.p
         (703 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310047|ref|YP_003774139.1| TonB-dependent copper receptor ...  1240   0.0  

>gi|300310047|ref|YP_003774139.1| TonB-dependent copper receptor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 709

 Score = 1240 bits (3209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/709 (84%), Positives = 641/709 (90%), Gaps = 6/709 (0%)

Query: 1   MQMTPCACAIALAFTVCSDVLARTDDETPLPAITVSSDKPSALPPSADSAALLNDQPGYA 60
           MQ TPCACAIALAFTVC DV A  D++TPLPAITV   KPS  PPSADSAALLNDQPGYA
Sbjct: 1   MQSTPCACAIALAFTVCGDVFASGDEQTPLPAITVRGAKPSMTPPSADSAALLNDQPGYA 60

Query: 61  TAAGGGVSALPVLNGFAADRLKIRLDGMEVTAACGNQMNAPMSYMPPAQVGMTRVIAGIT 120
           TAAGGGVSALPVLNGFAADRLK RLDGMEVTAACGNQMNAPMSYMPPAQVGMTRVIAGIT
Sbjct: 61  TAAGGGVSALPVLNGFAADRLKTRLDGMEVTAACGNQMNAPMSYMPPAQVGMTRVIAGIT 120

Query: 121 PVSVGGDSIGGSIELSSPAPQFASAPGQLLTKGGFAVSARSVNAEVSASLNATVASDSLS 180
           PVSVGGDSIGG+IEL+SPAPQFAS PGQ LTKGGF+ SARSVN+EVSAS+NATVASD LS
Sbjct: 121 PVSVGGDSIGGTIELNSPAPQFASQPGQWLTKGGFSASARSVNSEVSASVNATVASDQLS 180

Query: 181 VAYVASQSRAESYVNGNGDKVLSSLYQSNNHALTVAARGEGQQLVLKVGQQYIPYQGFPN 240
           VAYVASQSRAESYVNGNGDKVLSSLYQSNNHALT+AARGEGQQLVLKVGQQYIPYQGFPN
Sbjct: 181 VAYVASQSRAESYVNGNGDKVLSSLYQSNNHALTLAARGEGQQLVLKVGQQYIPYQGFPN 240

Query: 241 EYMDMTGNRSTFANLGYERRFDWGKLFGRLYWQRTEHEMGFFSGERSGTMPMQTQGRDLG 300
           EYMDMTGNRSTFANLGYERRFDWG+L G+LYWQRTEHEMGFF  ER G MPMQTQGRDLG
Sbjct: 241 EYMDMTGNRSTFANLGYERRFDWGRLSGKLYWQRTEHEMGFFGTERRGNMPMQTQGRDLG 300

Query: 301 YTLRADIDLAPEGRSVLRVGHEYHSFHLDDVWPPVPGSMMMGPRPYLNINDGKRDRLALF 360
           Y LRADIDLA +  SVLRVGHEYHSFHLDDVWPPV GSMMM PR Y+NIN GKRDR ALF
Sbjct: 301 YALRADIDLAADSSSVLRVGHEYHSFHLDDVWPPVAGSMMMSPRTYVNINGGKRDRFALF 360

Query: 361 AEWEQQLDARWSTLVGVRDELVKSDAGNVQSYGTNMMNQPDLRAANAFNARGHAKTDNNI 420
           AEWE +LDARWSTL+G+RDELVKSDAGNVQSYGTNMMNQPDL AANAFNAR HAKTDNNI
Sbjct: 361 AEWEHKLDARWSTLLGLRDELVKSDAGNVQSYGTNMMNQPDLNAANAFNARSHAKTDNNI 420

Query: 421 DLTALARWTPDAGKTYEFGYARKTRSPNLYERYTWGRGTMAMTMTNWFGDGNGYVGNIDL 480
           DLTALAR   DAG  YEFGYARKTRSPNLYERYTWGRG MAM MTNWFGDGNGYVG+IDL
Sbjct: 421 DLTALARLEADAGSRYEFGYARKTRSPNLYERYTWGRGGMAMRMTNWFGDGNGYVGDIDL 480

Query: 481 KPEVAHTFSGSADWH------SQDSEGGQHRWFFKMTPYFSYVENYIDADVIGRFNPYSV 534
           KPEVAHT SG+ADWH       + SEG + RWFF++TPYFSYVENYIDAD +GRFNPY V
Sbjct: 481 KPEVAHTLSGTADWHSEDSEGGEGSEGSERRWFFRLTPYFSYVENYIDADPLGRFNPYRV 540

Query: 535 STASARLLQFANHDARLYGINASWKWPLAVASGLGEVSFTGKAGITRGKRVDGGNLYHMM 594
           + AS   LQFANHDARLYGINA+WKWPL  A+GLG+++FTGKAG+TRGKRVDGGNLYHMM
Sbjct: 541 AAASGAYLQFANHDARLYGINAAWKWPLWRAAGLGDIAFTGKAGLTRGKRVDGGNLYHMM 600

Query: 595 PFHVLAALEHKQGPWTQRAEMNYVARKSQVDSNRVEPVTASYTVFNLRSSYRFNTAISVT 654
           P ++LAALE   G W+ RAE+NYVARKS+VDSNR+EPVTASY+V NL+SSYRFN  ISVT
Sbjct: 601 PLNILAALEQTWGAWSNRAELNYVARKSRVDSNRLEPVTASYSVVNLKSSYRFNQHISVT 660

Query: 655 AGISNLFNRNYAEPLGGVYLSGLASSRSGSLQALPGYGRSLDVGVNVSF 703
           AG+SNLFNRNYAEPLGGVYL+GLA +RSGSLQALPGYGRSLDVGVNVSF
Sbjct: 661 AGVSNLFNRNYAEPLGGVYLAGLAQARSGSLQALPGYGRSLDVGVNVSF 709


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,173,260
Number of extensions: 92552
Number of successful extensions: 292
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 611
Effective length of database: 1,184,250
Effective search space: 723576750
Effective search space used: 723576750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)