BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0675.p
         (427 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310046|ref|YP_003774138.1| chloride-channel protein [Herba...   786   0.0  
gi|300311435|ref|YP_003775527.1| chloride channel protein [Herba...    69   5e-13

>gi|300310046|ref|YP_003774138.1| chloride-channel protein
           [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/427 (95%), Positives = 417/427 (97%)

Query: 1   LSLYQLSKSHLHRLWVEYGILWSGAIIVGLVAVLYAQAIEIGFGVFRSIEHKQPWLPLLL 60
           LSLYQLSKSHL RLWVEYGILWSGA+IVGLVAVLYAQAIEIGFGVFRSI+H+ PWLPLLL
Sbjct: 15  LSLYQLSKSHLRRLWVEYGILWSGAVIVGLVAVLYAQAIEIGFGVFRSIQHRSPWLPLLL 74

Query: 61  TPAVCAACVWLTRRYFAGSEGSGIPQAIATLHGDTDERGSALLSIRVMVGKIVLSIVAIA 120
           TPAVCAACVWLTRRYF GSEGSGIPQAIATLHGDT ERGS LLS+RV++GKIVLS+VAIA
Sbjct: 75  TPAVCAACVWLTRRYFPGSEGSGIPQAIATLHGDTAERGSTLLSLRVLLGKIVLSVVAIA 134

Query: 121 GGMTIGREGPTVQIGAAIMYNLRRLYPSGYEHMERRLILAGAAAGLAAAFNTPLAGIVFA 180
           GGMTIGREGPTVQIGAAIMYNLRRLYP+GYEHMERRLILAGAAAGLAAAFNTPLAGIVFA
Sbjct: 135 GGMTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGLAAAFNTPLAGIVFA 194

Query: 181 IEELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSITFPGETSSRLILAVVVTAVL 240
           IEELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSI FPGETS RLILAV+VTAVL
Sbjct: 195 IEELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGETSGRLILAVIVTAVL 254

Query: 241 MGVAGGLFCWLILNPTRWIPAPIVTLRAERPVAFAALCGFIVAVIGVAAGGATFGSGYEQ 300
           MGVAGGLFCWLILNPTRWIP  +VTLR ERPVAFAA+CGFIVAVIGVAAGGATFGSGYEQ
Sbjct: 255 MGVAGGLFCWLILNPTRWIPPALVTLRTERPVAFAAVCGFIVAVIGVAAGGATFGSGYEQ 314

Query: 301 AHGLLNDGQGLSVFYPFLKFASMIGSYLPGLPGGIFAPSLSIGAGFGNLLHLLFGGTSLP 360
           AHGLLNDGQGLSVFYPFLKFASMIGSYLPGLPGGIFAPSLSIGAGFGNLLHLLFGGTSLP
Sbjct: 315 AHGLLNDGQGLSVFYPFLKFASMIGSYLPGLPGGIFAPSLSIGAGFGNLLHLLFGGTSLP 374

Query: 361 MLVALAMVGYLAAVTQSPITAFVIVMEMVDGHALVISLMATALIASAVSKVFAPPLYETL 420
           MLVALAMVGYLAAVTQSPITAFVIVMEMVDGHALVISLMATALIASAVSKVFAPPLYETL
Sbjct: 375 MLVALAMVGYLAAVTQSPITAFVIVMEMVDGHALVISLMATALIASAVSKVFAPPLYETL 434

Query: 421 AERYLKS 427
           AERYLKS
Sbjct: 435 AERYLKS 441


>gi|300311435|ref|YP_003775527.1| chloride channel protein
           [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 179/408 (43%), Gaps = 52/408 (12%)

Query: 44  GVFRSIEHKQPWLPLLLTPAVCAACV------WLTRRYFAGSEGSGIPQAIATLHGDTDE 97
           G F  I    PW   +L P  C   V      W  +R  AG+ G  + +A+A        
Sbjct: 35  GSFVDIAKGLPWYTRVLLP-TCGGVVAGLFLVW-AKRTPAGNGGDYM-EAVAI------- 84

Query: 98  RGSALLSIRVMVGKIVLSIVAIAGGMTIGREGPTVQIGA--AIMYNLRRLYPSGYEHMER 155
            G   + +R  + + + S+ +IA G +IGREGP VQ+ A  A +      +PS      R
Sbjct: 85  -GDGAIPVRNTLLRSISSLASIASGGSIGREGPMVQLSALCASLVGKFSHFPSS---RLR 140

Query: 156 RLILAGAAAGLAAAFNTPLAGIVFAIEELSRSFEQRASGVVITTIIFAGLVALSINGNYT 215
            L+  GAAAG+ +A+N P+AG  F  E +  S    + G V+   + A +    + G   
Sbjct: 141 LLVACGAAAGITSAYNAPIAGAFFITEIVLGSLVMESFGPVVVASVVANITMRELPGYRA 200

Query: 216 YFGSITFPGETSSRLILAVVVTAVLMGVAGGLFCWLILNPTRWIPAPIVTLRAERPVAFA 275
            +    FP E     ++  +V  VL GV    F    L            LR   PV   
Sbjct: 201 AYEMPYFP-EIGGWEVMLFLVLGVLAGVLAPQF----LRVLELGKHGFGKLRLPLPVRLG 255

Query: 276 ALCGFIVAVIGVAAGGATFGSGYEQAHGLLNDG---QGLSVFYPFLKFASMI--GSYLPG 330
                +V +I V      +G+GY   + LL+     Q + +       A+ I  GS   G
Sbjct: 256 VGG-LLVGLISVQV-PEVWGNGYSLVNSLLHTSWVWQAVLMVLVVKVLATSITVGS---G 310

Query: 331 LPGGIFAPSLSIGAGFGNLLHLLFGGTSLPML-------VALAMVG---YLAAVTQSPIT 380
             GGIF P+L +GA  G     LFG  +  +L        A AMVG   +LAA + +P+ 
Sbjct: 311 AVGGIFTPTLFVGAAVG----YLFGDAAQALLPVHISQPFAYAMVGMGAFLAAASYAPLM 366

Query: 381 AFVIVMEMVDGHALVISLMATALIASAVSK-VFAPPLYETLAERYLKS 427
           A +++ EM   + +V+ LM + ++A  V++ V    +YE   +R+  +
Sbjct: 367 AILMIFEMTLSYQVVLPLMLSCVVAYVVARSVDGRSMYEITLKRHRDN 414


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,274,010
Number of extensions: 51249
Number of successful extensions: 296
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 4
Length of query: 427
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 339
Effective length of database: 1,203,190
Effective search space: 407881410
Effective search space used: 407881410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)