BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0672.p (531 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312012|ref|YP_003776104.1| phosphodiesterase transmembrane... 179 4e-46 gi|300314042|ref|YP_003778134.1| signal transduction protein con... 175 7e-45 gi|300312026|ref|YP_003776118.1| signal transduction protein con... 174 2e-44 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 172 7e-44 gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei... 171 1e-43 >gi|300312012|ref|YP_003776104.1| phosphodiesterase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 797 Score = 179 bits (455), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 138/235 (58%), Gaps = 3/235 (1%) Query: 11 RTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDTLL 70 R AL+ LQP + L +G++ G E L RW P++G + P +FI AE G + L Sbjct: 539 RRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFAETTGFIRMLT 598 Query: 71 LQLLDTVA---DSLRHWPADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQLEIT 127 L +++ VA + L+ L+ ++NLS R LD L + ++ H L + L LEIT Sbjct: 599 LWMMEQVARLSEQLQQQGVQLKFSVNLSTRDLLDQELPTAFAAILQRHRLQPAALCLEIT 658 Query: 128 ESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRTMDQ 187 ES+++ D R T+ G +LS+DDFGTGYSSL L+ P DE+KID SFV M Q Sbjct: 659 ESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELKIDKSFVMKMAQ 718 Query: 188 DPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAPL 242 D D +IV + LG +L + VVAEGVE+ LL++MGC+ GQG+ +G+P P+ Sbjct: 719 DQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMGKPMPV 773 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 175 bits (444), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 97/250 (38%), Positives = 140/250 (56%), Gaps = 4/250 (1%) Query: 9 DIRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDT 68 D+R ALD G QP + L +GR+ G E L RW PQ G+VSP FI +AE+ GL+ Sbjct: 697 DLRNALDHGEFLLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLILP 756 Query: 69 LLLQLLDTVADSLRHWP----ADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQL 124 + +L R W AD+ +++NLS QFL L+ ++ V+ GLP L+L Sbjct: 757 IGAWVLRAACTQCRQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLEL 816 Query: 125 EITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRT 184 E+TES ++ D E + + ++ G LS+DDFGTGYSSL L+ +P D +KID SFVR Sbjct: 817 ELTESLMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRD 876 Query: 185 MDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAPLAE 244 + D D I ++ L + LK+ V+AEGVET L+ GC+ QG+ P P + Sbjct: 877 ITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADK 936 Query: 245 AARLIEQQGV 254 +++ Q V Sbjct: 937 FEQILRQDRV 946 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 141/248 (56%), Gaps = 4/248 (1%) Query: 9 DIRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDT 68 ++R A++ QP I L GRI G E L RW P RG++ P +FIT+AE+ L+D Sbjct: 848 ELRRAIERAEFVVHYQPKIELAEGRIVGAEALVRWQHPLRGLLPPGEFITLAEETRLIDQ 907 Query: 69 LLLQLLDTVADSL----RHWPADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQL 124 + L +LD + + R++INL+ QF D LL+ + V+ HG P S L+ Sbjct: 908 IGLLVLDVACRDIGLMRQQQMTCGRISINLTGSQFGDERLLDDIKEVVDRHGTPPSCLEF 967 Query: 125 EITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRT 184 EITES ++ + ER + + R G ++S+DDFGTGYSSL L+ +P + +KID SF+ Sbjct: 968 EITESMVMHNRERAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVNTLKIDKSFIND 1027 Query: 185 MDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAPLAE 244 + +P+S IV A+ + +L + VV EGVET L+ G + QG++ +P P A+ Sbjct: 1028 IPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEKQLQALREFGSDEYQGYYFSKPVPYAQ 1087 Query: 245 AARLIEQQ 252 +L+ Q Sbjct: 1088 FVQLLAGQ 1095 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 172 bits (435), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 144/239 (60%), Gaps = 5/239 (2%) Query: 9 DIRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDT 68 ++R ALD QP + L+ GR+ G E L RW PQ+G+V P FI AE+AGL+ Sbjct: 445 NLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVPPDRFIPFAEEAGLIVP 504 Query: 69 LLLQLLDTVADSLRHWPAD----LRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQL 124 + +L T + W + +A+NLSPRQ L+ SL + ++ V+ GL S L+L Sbjct: 505 IGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQ-LNQSLPDFVAGVLAQSGLAASWLEL 563 Query: 125 EITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRT 184 EITE+ +++D E+++ T+ A ++ G +S+DDFGTGYSSL+ L+ +P D +KID SFVR Sbjct: 564 EITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPVDALKIDKSFVRD 623 Query: 185 MDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAPLA 243 + +D DS IV A+ L L + V+AEGVE LK C+ QG++ G+P +A Sbjct: 624 IVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENACDEVQGYYFGKPMEVA 682 >gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 695 Score = 171 bits (434), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 98/233 (42%), Positives = 133/233 (57%), Gaps = 4/233 (1%) Query: 11 RTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDTLL 70 R AL+ G QP L G + G E L RW P G+V+P FI +AE +GL+ + Sbjct: 445 RVALERGQFRLVYQPKFSLPAGPVLGAEALLRWEHPVHGLVAPDQFIGLAERSGLILPIG 504 Query: 71 LQLLDTVADSLRHWPA----DLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQLEI 126 +LD +R W A D +++NLS QF D LLE + T + H LP L LE+ Sbjct: 505 AWVLDEACRQMREWFALGYVDWTMSVNLSALQFADPHLLEVVRTTLERHQLPPPCLTLEV 564 Query: 127 TESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRTMD 186 TES+ + D E +LQT+R G +S+DDFGTGYSSL L+ P +E+KID FVR + Sbjct: 565 TESTAMHDTEASLQTLRQIADLGVEISIDDFGTGYSSLLYLKRLPANELKIDRGFVRELR 624 Query: 187 QDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRP 239 QD + IV A+ LG++L + +VAEGVET L GC+ QG+ +GRP Sbjct: 625 QDGEDAAIVSAIVALGRTLNLRIVAEGVETVEQQDFLTAAGCDALQGYLMGRP 677 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,730,716 Number of extensions: 76027 Number of successful extensions: 300 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 18 Length of query: 531 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 441 Effective length of database: 1,193,720 Effective search space: 526430520 Effective search space used: 526430520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)