BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0670.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310043|ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-ad...   482   e-137

>gi|300310043|ref|YP_003774135.1|
           S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score =  482 bits (1240), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/258 (90%), Positives = 248/258 (96%)

Query: 1   MKHIPRKRFGQNFLTDDVVLHDIISSIAPAADDAMVEIGPGLAAMTELLLEQARHLHVVE 60
           MKHIPRKRFGQNFLTD++VLHDII+SIAPAADDAMVEIGPGLAAMT LLLE  RHLHVVE
Sbjct: 1   MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60

Query: 61  LDRDLVERLKKRFDPTRLTVHSADALKFDFASIPVPAGRKLRVVGNLPYNISSPLLFHLA 120
           LDRDLVERLKKRFD  RLTVHSADALKFDF++IPVP GRKLRVVGNLPYNISSPLLFHLA
Sbjct: 61  LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPEGRKLRVVGNLPYNISSPLLFHLA 120

Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKVYGRLSVMLQWRYDMELLFVVPPTAFDPPPKV 180
           EIAPQVQDQHFMLQKEVVERMVAEPGSK YGRLSVMLQWRY MELLFVVPPTAFDPPPKV
Sbjct: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180

Query: 181 DSAIVRMIPLAQPMACEQALLEKVVTQAFSQRRKVIRNCLAGLFSEEELRQVGVDPQARP 240
           DSAIVRMIPLAQP+AC+QALLE+VVT+AFSQRRKVIRNC+AGLFSE+ELRQVG+DPQARP
Sbjct: 181 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP 240

Query: 241 ETVPVQQFVALAQLLAAR 258
           E VP++QFVALA LLAAR
Sbjct: 241 EAVPMEQFVALANLLAAR 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 728,182
Number of extensions: 27926
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)