BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0668.p
         (500 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl c...   830   0.0  
gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isome...    64   4e-11
gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isome...    60   4e-10

>gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl
           cis-trans isomerase [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/499 (88%), Positives = 466/499 (93%), Gaps = 3/499 (0%)

Query: 1   MRNMRTPLLATTKTVTALLCTLGLISNAYAQFATTIIPVTPPETAGSTQSAPAKGAAKAT 60
           MRNMRTPLLATTKTVTALLC LG+ISNA AQFATTIIPVTPPET  S Q APA G   A 
Sbjct: 1   MRNMRTPLLATTKTVTALLCMLGVISNAQAQFATTIIPVTPPET--SAQPAPANGKPPAA 58

Query: 61  RPAASKPASPVATTPATPASTAASTRVEPRPVDSIMVVVNNEVITRQEVAERLASVEKRM 120
            PAA   A+  A   AT A+  +  RVEPRPVDSIMVVVNNEVITRQEVA+RLASV KRM
Sbjct: 59  SPAAPAKAAAPAPAKAT-AAAPSQARVEPRPVDSIMVVVNNEVITRQEVADRLASVVKRM 117

Query: 121 AAQNVQLPPRSQLVHQLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIAEQNKLSLPE 180
           +AQNVQLPPR QLV QLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIA+QNKLS+ +
Sbjct: 118 SAQNVQLPPRDQLVRQLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQ 177

Query: 181 FRSRLEAEGMNYASFREEIRREILSQRLREREVDNKVVVTESEIDNYLAAQANAGGQRQE 240
           FR+RLEAEGMNYASFREEIRREILSQRLREREVDNKVVVTESE+DNYLAA+ANAGGQRQE
Sbjct: 178 FRTRLEAEGMNYASFREEIRREILSQRLREREVDNKVVVTESEVDNYLAAEANAGGQRQE 237

Query: 241 LDIAQILIRVPENATPEQLAARRERAEDVLRQLKTGADFTKTAAAYSDSSDALTGGDLGW 300
           LDIAQILIRVPENATP+QLA RRERAEDVLRQLKTGADF KTAAAYSD+SDAL+GGDLGW
Sbjct: 238 LDIAQILIRVPENATPDQLAQRRERAEDVLRQLKTGADFAKTAAAYSDASDALSGGDLGW 297

Query: 301 RPVDRLPQLFVDGVAKLQDGQVSGLLKSGNGFHILKLVGRRTADGSQAAAPAVQQTHVRH 360
           RP DRLPQLF+DGVAKLQDGQVSGLLKSGNGFHILKLVGRRTADG+QAAAPAVQQTHVRH
Sbjct: 298 RPADRLPQLFLDGVAKLQDGQVSGLLKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRH 357

Query: 361 ILIKVNQVVTAAEAKRKLLELKERLDHGSATFEELAKLYSNDLSASKGGDLGWIYPGDTV 420
           ILIKVNQVVTAAEAKRKL ELKERLDHGSATFEELAKLYSNDLSASKGGDLGW+YPGDTV
Sbjct: 358 ILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWVYPGDTV 417

Query: 421 PEFERAMDQLKPGEVSQPIETPFGYHLIQVIERKTDDASKERARQAARQAIRDRKIEEAT 480
           PEFERAMDQLKPGEVSQPIETPFGYHLIQV+ERKTDDASKERARQAARQAIR+RKI+EAT
Sbjct: 418 PEFERAMDQLKPGEVSQPIETPFGYHLIQVVERKTDDASKERARQAARQAIRERKIDEAT 477

Query: 481 EDWLRQIRDRAYVEYRNDD 499
           EDW+RQIRDRAYVEYRND+
Sbjct: 478 EDWMRQIRDRAYVEYRNDE 496


>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 354 QQTHVRHILIKVNQVVTAAEAKRKLLELKERLDHGSATFEELAKLYSNDLSASKGGDLGW 413
           ++ H RHIL+   +   A  AK K              FE+LAK   +  SA+ GGDL W
Sbjct: 130 KEYHARHILVDKKEDAEAIIAKLK----------AGTKFEDLAKQSKDTGSAANGGDLDW 179

Query: 414 IYPGDTVPEFERAMDQLKPGEVS-QPIETPFGYHLIQV 450
             P   V  F  AM  LK GEV+  P++T FG+H+I++
Sbjct: 180 ATPASFVKPFSDAMVALKKGEVTPTPVQTQFGWHVIKL 217


>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans
           isomerase D [Herbaspirillum seropedicae SmR1]
          Length = 639

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 354 QQTHVRHILIKVNQVVTAAEAKRKLLE---LKERLDHGSATFEELAKLYSND-LSASKGG 409
           +Q    HILI V +  +AA+      +   L  +L      F +LAK  S D  SA  GG
Sbjct: 266 EQRRASHILIAVKKDASAADQAAAKSKAEGLVAQLRKNPGEFAKLAKANSQDPGSAENGG 325

Query: 410 DLGWIYPGDTVPEFERAMDQLKPGEVSQPIETPFGYHLIQV 450
           DLG+   G  V  FE A   LK GE+S P+++ FGYH+I+V
Sbjct: 326 DLGYFGKGAMVKPFEDAAFSLKQGEISDPVQSDFGYHIIEV 366


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,250,775
Number of extensions: 46642
Number of successful extensions: 257
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 4
Length of query: 500
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,198,455
Effective search space: 492565005
Effective search space used: 492565005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)