BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0663.p
         (382 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol hy...   693   0.0  
gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol hy...    84   2e-17

>gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/382 (91%), Positives = 362/382 (94%)

Query: 1   MESVDFDLIICGGGPVGQSVAGLLARRQLPAERLALVDMKSPEQAAVDPRTIALSYGSRQ 60
           MESVDFDLIICGGGPVGQSVAGLLARRQLPA R+ALVDMKSPEQAA DPRTIALSYGSRQ
Sbjct: 1   MESVDFDLIICGGGPVGQSVAGLLARRQLPAARIALVDMKSPEQAAADPRTIALSYGSRQ 60

Query: 61  ILDELGAWDAIGRSATSIEQIHVSRRGHFGRTLLDRKDYQLPALGYVARYGEVNRALASA 120
           ILDELGAWD IGRSAT+IEQIHVSRRGHFGRTLLDRKDYQLPALGYVARYGEVNRALASA
Sbjct: 61  ILDELGAWDDIGRSATAIEQIHVSRRGHFGRTLLDRKDYQLPALGYVARYGEVNRALASA 120

Query: 121 IAPLGLKLMRPAQAQEIVEEDDHVAVTLKDGRVLRAQLLIQAEGGVFGEQQQKTLQRDYQ 180
           IAPLGL LMRPA+AQ+I EED HVAVTLKDGR+LRA L+IQAEGGVFGEQQ KTLQRDYQ
Sbjct: 121 IAPLGLSLMRPAEAQQIEEEDQHVAVTLKDGRILRAHLVIQAEGGVFGEQQHKTLQRDYQ 180

Query: 181 QLGLIGHVHVDQPIAHRAFERFTDEGPLALLPQDDGYALVWCVRPATGESLLALDDAAFL 240
           QLG+I HV  D  IAHRAFERFTDEGPLALLPQDDGYALVWCVRPATGE L+AL+DA FL
Sbjct: 181 QLGIIAHVQADGVIAHRAFERFTDEGPLALLPQDDGYALVWCVRPATGEQLMALEDAGFL 240

Query: 241 AALQHTFGQRLGRFIRISQRHAFPLGLNARPGQSRRVVAIGNAAQTLHPVAGQGLNLGLR 300
           AALQ TFG+R+GRF RIS RHAFPLGLNARPGQSRRVVAIGNAAQTLHPVAGQGLNLGLR
Sbjct: 241 AALQRTFGERVGRFTRISPRHAFPLGLNARPGQSRRVVAIGNAAQTLHPVAGQGLNLGLR 300

Query: 301 DARVLADVLARDISPQALQAFERERGQDRGLTIRLTDLMARIFAGSPQGSPLQAALGLSL 360
           DARVLADVLAR+ISPQALQAFER+RGQDR LTIRLTDLMARIFAGSPQGSPLQAALGLSL
Sbjct: 301 DARVLADVLAREISPQALQAFERQRGQDRSLTIRLTDLMARIFAGSPQGSPLQAALGLSL 360

Query: 361 GAIDLLPGARGLLAEQMMFGRR 382
           GAIDLLPGARGLLAE MMFGRR
Sbjct: 361 GAIDLLPGARGLLAEHMMFGRR 382


>gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 178/378 (47%), Gaps = 27/378 (7%)

Query: 7   DLIICGGGPVGQSVAGLLARRQLPAERLALVDMKSP-EQAAVDPRTIALSYGSRQILDEL 65
           D+ I G G VG++ A  LA+       LA     +P + A+ D R  AL++ ++++L  +
Sbjct: 18  DICIVGDGAVGKTAALGLAQAGFKVTLLAPPPKAAPPDTASWDVRVYALNHTAQRLLSSV 77

Query: 66  GAWDAI-GRSATSIEQIHVSRRG-----HFGRTLLDRKDYQLPALGYVARYGEVNRALAS 119
             WDA+ G    +++ + V   G       G    D    +  AL ++     +++AL +
Sbjct: 78  RVWDAMEGERIAAVDNMTVHGDGVPDKARPGLLSFDAYAARTDALAWIVEDRNLDQALDA 137

Query: 120 AI--APLGLKLMRPAQAQEIVEEDDHVAVTLKDGRVLRAQLLIQAEGGVFGEQQQKTLQR 177
           A+  AP  +++++  +A  +    +   +TL+ G+ L A L+I A+G     + Q  +  
Sbjct: 138 ALRFAP-NIRVVQ-GRATALAVLGETATLTLESGQSLSASLVIGADGANSWVRGQCDIGL 195

Query: 178 DYQQLG---LIGHVHVDQPIAHRAFERFT-DEGPLALLP-QDDGYALVWCVRPATGESLL 232
           DY+  G   ++ +   + P    A++ F+  EG +ALLP   +  +LVW    A  + LL
Sbjct: 196 DYRAYGQNAIVTNFSCELPHRGVAYQWFSPTEGVIALLPLPGNRVSLVWSAPQALADQLL 255

Query: 233 ALDDAAFLAALQHTFGQRLGRFIRISQR--HAFPLGLNARPGQ--SRRVVAIGNAAQTLH 288
            L  +A    L       LG    +      AFPL L  +P    + RV  IG+AA  +H
Sbjct: 256 KLPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRL-IKPHAMIAPRVALIGDAAHVVH 314

Query: 289 PVAGQGLNLGLRDARVLADVLAR-----DISPQALQAFERERGQDRGLTIRL-TDLMARI 342
           P+AG G+NLG  D   L D+L +     D   + L        ++  L +++ TD + RI
Sbjct: 315 PMAGHGMNLGFGDVAALIDILLKREPQYDCGDERLLRRYARARKEEVLLMQIATDGLHRI 374

Query: 343 FAGSPQGSPLQAALGLSL 360
           F+   +   L   LG+SL
Sbjct: 375 FSTEAEPVRLVRNLGMSL 392


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,291,394
Number of extensions: 57862
Number of successful extensions: 241
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 2
Length of query: 382
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,207,925
Effective search space: 356337875
Effective search space used: 356337875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)