BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0661.p
         (479 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310034|ref|YP_003774126.1| transmembrane NAD(P) transhydro...   944   0.0  

>gi|300310034|ref|YP_003774126.1| transmembrane NAD(P)
           transhydrogenase subunit beta [Herbaspirillum
           seropedicae SmR1]
          Length = 479

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/479 (98%), Positives = 476/479 (99%)

Query: 1   MSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGEGG 60
           MSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGEGG
Sbjct: 1   MSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGEGG 60

Query: 61  NPSGDIGYLLVAAGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP 120
           NPSGDIGYLLVA GVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP
Sbjct: 61  NPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP 120

Query: 121 WALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQ 180
           WALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQ
Sbjct: 121 WALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQ 180

Query: 181 HFLNLLLALAMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNSY 240
           HFLNLLLA+AMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNSY
Sbjct: 181 HFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNSY 240

Query: 241 SGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGEAAAVGG 300
           SGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGG+AAA GG
Sbjct: 241 SGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDAAAAGG 300

Query: 301 AAQQQRSVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNGVTVKYA 360
            AQQQR+VKSGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNGVTVKYA
Sbjct: 301 GAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNGVTVKYA 360

Query: 361 IHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPAAKDPKS 420
           IHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPAAKDPKS
Sbjct: 361 IHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPAAKDPKS 420

Query: 421 PIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVD 479
           PIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVD
Sbjct: 421 PIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVD 479


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,327,494
Number of extensions: 53742
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 390
Effective length of database: 1,198,455
Effective search space: 467397450
Effective search space used: 467397450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)