BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0652.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310026|ref|YP_003774118.1| TonB protein [Herbaspirillum se...   311   2e-86

>gi|300310026|ref|YP_003774118.1| TonB protein [Herbaspirillum
           seropedicae SmR1]
          Length = 232

 Score =  311 bits (798), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 212/233 (90%), Positives = 221/233 (94%), Gaps = 1/233 (0%)

Query: 1   MNAISPSLMSLTPPSALMRQARKIGPLALIILLHIGFFWALQSGLVKQVSTAVVPKEVIA 60
           MNA SP LMS++PPSALMRQARKIGPL LIILLHI FFWALQSGLVKQ   A VPKEVIA
Sbjct: 1   MNATSPLLMSMSPPSALMRQARKIGPLGLIILLHIAFFWALQSGLVKQAVNA-VPKEVIA 59

Query: 61  TFIVPEKAPEPAPPKAEPAPPKQVKIVKKVVAPPKPIPVTETPAPTAITAPPQPPQPATP 120
           TFIVPEKAPEPAPPKA+PAPPK+VKIVKK V PPKPIPVTETPAPTAITAPPQPPQPA P
Sbjct: 60  TFIVPEKAPEPAPPKAQPAPPKEVKIVKKAVTPPKPIPVTETPAPTAITAPPQPPQPAAP 119

Query: 121 APQVAAEPTPAPAAPPGPVLPKQITSGIEYIEKPNPTYPSVSRRMGEEGVVEFRVTVNTS 180
           APQVAAEPTPAPAAPPGPVLPKQITSGIEYIE+PNPTYPSVSRRMGEEGVVEFRVTVNTS
Sbjct: 120 APQVAAEPTPAPAAPPGPVLPKQITSGIEYIERPNPTYPSVSRRMGEEGVVEFRVTVNTS 179

Query: 181 GRAEKVEITKSSGYARLDDAARSAVMRAVFKPYIENGRAIMVSTVGSLAFRLN 233
           GRAEKVEITKSSGY+RLDDAAR+A+MRAVFKPYIENG+AI VSTVGSLAFRLN
Sbjct: 180 GRAEKVEITKSSGYSRLDDAARNAIMRAVFKPYIENGKAITVSTVGSLAFRLN 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 438,632
Number of extensions: 13319
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 4
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)