BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0646.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310020|ref|YP_003774112.1| cytochrome b561 protein [Herbas...   320   3e-89
gi|300311752|ref|YP_003775844.1| cytochrome b561 protein [Herbas...    84   8e-18

>gi|300310020|ref|YP_003774112.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score =  320 bits (821), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/174 (91%), Positives = 167/174 (95%)

Query: 1   MERYTKPAVLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALACVR 60
           M+RYTKPA+LLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALAC R
Sbjct: 1   MDRYTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALACAR 60

Query: 61  LLWRLTHKAPAYPANMPGWQQAAAHSLHLGLYALMFAIPVSGYFYSLSAGVPVVYLGVLP 120
           LLWRLTH+APAYPA+MP WQQ+AAH LHLGLYALMFAIPVSGYFYSL+AGVPVVYLGVLP
Sbjct: 61  LLWRLTHRAPAYPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVLP 120

Query: 121 LPVLMAPDPALKPLLKEIHYWLNMTLLAAFALHVLAALKHQFIDRDNIFKRMLP 174
           LPVLMAP+P LKPLLKE HYWLNM LL AFALHVLAALKHQFIDRDNIFKR+LP
Sbjct: 121 LPVLMAPNPELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRILP 174


>gi|300311752|ref|YP_003775844.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score = 83.6 bits (205), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 92/171 (53%), Gaps = 2/171 (1%)

Query: 2   ERYTKPAVLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALACVRL 61
            RY   +V+LHW+I LL + A        DIP   P +    + H   G  VL L  +RL
Sbjct: 13  SRYHPLSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRL 72

Query: 62  LWRLTHKAPAYPANMPGWQQAAAHSLHLGLYALMFAIPVSGYFYSLSAGVPVVYLGVLPL 121
           L R     P   A +P  Q+  A ++HL LYA+M  +PV+G  ++ + G  VV+ G + L
Sbjct: 73  LARKAFGVPPELA-LPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFG-MTL 130

Query: 122 PVLMAPDPALKPLLKEIHYWLNMTLLAAFALHVLAALKHQFIDRDNIFKRM 172
           PV++A D AL+  +KE H ++   +     LHVL AL HQF DR  I +RM
Sbjct: 131 PVILAKDMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 518,961
Number of extensions: 19174
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)