BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0645.p
         (187 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310019|ref|YP_003774111.1| signal peptide protein [Herbasp...   294   4e-81

>gi|300310019|ref|YP_003774111.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 187

 Score =  294 bits (752), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 160/187 (85%), Positives = 174/187 (93%)

Query: 1   MTFSRFFQPSLLALAAASFALSAQAAPLKVDAAKSTVVATFKQLNVPVDAKFNKISAAID 60
           MT +RF +P+LLALAAASFALSAQAAPLKVDAAKS VVATFKQLNVPVDAKF K +A ID
Sbjct: 1   MTLNRFIKPTLLALAAASFALSAQAAPLKVDAAKSNVVATFKQLNVPVDAKFKKFAATID 60

Query: 61  FDAAKPEQGKATVDIDVASFDLGDAEYNKEVQKKEWFNAAQFPKASFVTSSIKAAGAGKF 120
           FDAAKP +GKA V+IDV SFDLG+ +YNKEVQKKEWFNAAQFPKASFV+SSIKA GAGK+
Sbjct: 61  FDAAKPAEGKANVEIDVTSFDLGEPDYNKEVQKKEWFNAAQFPKASFVSSSIKANGAGKY 120

Query: 121 TVAGKLTIKGKSSDVSFPLTLKKEGAAQIFDGVLPIKRLTYNIGEGEWKDTSMVADEVTI 180
            VAGKLTIKGK++DVSFPLT+KKEGAAQ+FDGVLPIKRLTYNIGEGEWKDT MVADEVTI
Sbjct: 121 DVAGKLTIKGKTTDVSFPLTVKKEGAAQVFDGVLPIKRLTYNIGEGEWKDTGMVADEVTI 180

Query: 181 KFHIVAQ 187
           KFHIVAQ
Sbjct: 181 KFHIVAQ 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 442,911
Number of extensions: 15762
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,241,070
Effective search space: 132794490
Effective search space used: 132794490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)