BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0641.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide re...   352   1e-98
gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide re...   164   4e-42

>gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide
           reductase MsrA protein [Herbaspirillum seropedicae SmR1]
          Length = 183

 Score =  352 bits (902), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 165/175 (94%), Positives = 172/175 (98%)

Query: 1   MATQIAVLGGGCFWCLEAVYQQVKGVQSVESGYTGGSVVDPSYEQVCGGQTGHAEVVKLV 60
           MA +IAVLGGGCFWCLEAVYQQV+GV+SVESGYTGGSVV+PSYEQVCGGQTGHAEVVKL 
Sbjct: 7   MAKEIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA 66

Query: 61  FDPQQISFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDQTQHDTARHIIAEMALV 120
           FDPQQIS+RE+LEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQD+ QHDTARHIIAEMALV
Sbjct: 67  FDPQQISYRELLEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEMALV 126

Query: 121 WDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSK 175
           WDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSK
Sbjct: 127 WDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSK 181


>gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  164 bits (415), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 3/171 (1%)

Query: 3   TQIAVLGGGCFWCLEAVYQQVKGVQSVESGYTGGSVVDPSYEQVCGGQTGHAEVVKLVFD 62
           T+  VL GGCFW ++ V+Q  +GV    SGY GG     +Y  V  G TGHAE V++ +D
Sbjct: 45  TETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYD 104

Query: 63  PQQISFREILEIFFTI-HDPTTLNRQGNDVGTQYRSVIYYQDQTQHDTARHIIAEM--AL 119
           P++ISF ++L+I+F++ HDPT LNRQG D GTQYRS I+  ++ Q + A+  IA++  A 
Sbjct: 105 PRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAK 164

Query: 120 VWDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVF 170
           V+ APIVT+++  Q +Y AEDYHQ+Y   HP Q Y A+   PK+  L++++
Sbjct: 165 VYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMY 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 562,187
Number of extensions: 21241
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)