BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0640.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310013|ref|YP_003774105.1| flavin reductase domain, FMN-bi...   329   8e-92
gi|300310811|ref|YP_003774903.1| 4-hydroxyphenylacetate 3-monoox...    61   5e-11

>gi|300310013|ref|YP_003774105.1| flavin reductase domain,
           FMN-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  329 bits (843), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 153/167 (91%), Positives = 164/167 (98%)

Query: 1   MHTRFPRAEARQFDAAHFRQALSQFATGVTVITTRLADGTLLGLTASSFNSVSLDPPLVL 60
           MHTRFPRA+ARQFDAAHFRQALSQFATGVTVITTRLADGTLLGLTASSFNSVSLDPPLVL
Sbjct: 1   MHTRFPRADARQFDAAHFRQALSQFATGVTVITTRLADGTLLGLTASSFNSVSLDPPLVL 60

Query: 61  WSLGTRANSLPVFSGNSHYVINILSAEQAHLAQQFASKMENRFEGVSYSLSRTGQPVLDG 120
           WSLG++ANS+PVFSGNSHYVINILSA+QAHLAQQFASKMENRFEGV+Y+LSRTGQP+L+G
Sbjct: 61  WSLGSKANSMPVFSGNSHYVINILSADQAHLAQQFASKMENRFEGVAYTLSRTGQPILEG 120

Query: 121 VSAWFECHNRSQYPEGDHVIFVGEVEHCEVDPQAALVFHNGRFVQTG 167
            SAWFECHNRSQYPEGDHVIFVGEVEHCE DPQAALVFH GRF++TG
Sbjct: 121 ASAWFECHNRSQYPEGDHVIFVGEVEHCEADPQAALVFHGGRFIKTG 167


>gi|300310811|ref|YP_003774903.1| 4-hydroxyphenylacetate
           3-monooxygenase small subunit [Herbaspirillum
           seropedicae SmR1]
          Length = 166

 Score = 60.8 bits (146), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 18  FRQALSQFATGVTVITTRLADGTLLGLTASSFNSVSLDPPLVLWSLGTRANSLPVFSGNS 77
           FR A+++ +  V +ITT    G    +T S+ +SVS +P  VL  +   + + P+  GN 
Sbjct: 5   FRDAMARLSAAVNIITTDGPAGRA-AMTVSAVSSVSDEPATVLVCINVSSAAHPILVGNG 63

Query: 78  HYVINILSAEQAHLAQQFAS----KMENRFEGVSYSLSRTGQPVLDGVSAWFECHNRSQY 133
              INIL+A    +A+  A       E R   V + +   GQPVL    A  E     Q 
Sbjct: 64  RLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIVLQQ 123

Query: 134 PEGDHVIFVGEVEHCEV 150
             G H +   E+ H  +
Sbjct: 124 QTGTHSVLFVEIRHIRL 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 538,802
Number of extensions: 20447
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)