BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0638.p
         (351 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310011|ref|YP_003774103.1| translation factor SUA5 [Herbas...   558   e-160
gi|300312576|ref|YP_003776668.1| translation factor SUA5 [Herbas...    67   2e-12

>gi|300310011|ref|YP_003774103.1| translation factor SUA5
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  558 bits (1437), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 302/349 (86%), Positives = 319/349 (91%), Gaps = 4/349 (1%)

Query: 1   MNDKSSPATPPIDAAAIMHAARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRP 60
           MNDKS+ ++  IDAAA+MHAAR LE+GGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRP
Sbjct: 1   MNDKSASSSA-IDAAAVMHAARTLERGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRP 59

Query: 61  ANHPVIVHVSPEADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVG 120
           ANHPVIVHVSPEADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVG
Sbjct: 60  ANHPVIVHVSPEADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVG 119

Query: 121 LRCPSHPVAQALLREFRGGKGGIAAPSANKFGHVSPTTAAHVREEFGSDENSPLDDVLDG 180
           +RCP+HPVAQALLREFRGGKGGIA PSANKFGHVSPTTA HVREEFGSD  S +D VLDG
Sbjct: 120 VRCPAHPVAQALLREFRGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDAGSLVDYVLDG 179

Query: 181 GQSEVGIESTIVDLSRIDSHGPVLLRPGQISADRIAAVLGVPLATPDATAPRASGTLDAH 240
           GQSEVGIESTIVDLSRID+HGPVLLRPGQISA+RI AVLGVPLATPDA+APRASGTLDAH
Sbjct: 180 GQSEVGIESTIVDLSRIDTHGPVLLRPGQISAERIEAVLGVPLATPDASAPRASGTLDAH 239

Query: 241 YAPHTPVVQVSLEELPTVLPKLAEIGQKVALIRRQFQGSVPACVEVTRAMPVSADAYAHD 300
           YAPHTPVVQV+ EEL TVL KLA +G+KVALI R  Q S    V VTRAMP +ADAYAHD
Sbjct: 240 YAPHTPVVQVAPEELATVLEKLAALGKKVALIAR-LQRS--GLVSVTRAMPDTADAYAHD 296

Query: 301 LYAALREMDHAAADLIVVESLPASADWQGVNDRLRRAAFDSQGLLARLF 349
           LYAALR+MDH  ADLIVVE+LP S  WQGVNDRLRRAAFDSQGLLARLF
Sbjct: 297 LYAALRDMDHTGADLIVVEALPLSGQWQGVNDRLRRAAFDSQGLLARLF 345


>gi|300312576|ref|YP_003776668.1| translation factor SUA5
           [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 15/196 (7%)

Query: 17  IMHAARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSPEADIG 76
           I  AA+ + +GGLVA PT++ Y L    +N  A+  +   +G    H + +     ++I 
Sbjct: 17  IKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVDEKHHLTLLCRDLSEIA 76

Query: 77  YWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAG-GQDSVGLRCPSHPVAQALLRE 135
            + A V     RL+ +  PG  T IL+    +P  ++   + ++GLR P + +A  LL E
Sbjct: 77  QY-AKVDNRQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIGLRVPENRIAHMLLEE 135

Query: 136 FRGGKGG--IAAPSANKFGHVSPTTAAHVREEFGSDENSPLDDVLDGGQSEVGIESTIVD 193
                 G  +  P  +      P T+A   E+  S     +D V+D G   +   +T++D
Sbjct: 136 LGQPLLGTTLILPDDD-----LPLTSA---EDIRSHLEKQIDLVIDSGACSLE-PTTVID 186

Query: 194 LSRIDSHGPVLLRPGQ 209
           L+  D   PVL+R G+
Sbjct: 187 LT--DDEQPVLVRQGR 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,223,206
Number of extensions: 55630
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,212,660
Effective search space: 321354900
Effective search space used: 321354900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)