BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0637.p
         (401 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole ca...   761   0.0  
gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide formy...    99   6e-22

>gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole
           carboxylase ATPase subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 401

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/401 (95%), Positives = 390/401 (97%)

Query: 1   MTQQSASTLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVA 60
           MTQQSAS LRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVA
Sbjct: 1   MTQQSASPLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVA 60

Query: 61  DRLINAAYDDGAALAELGALCAAVTTEFENVSAKSLATLALQTFVAPAASGVSIAQDRTA 120
           DRLINA YDDG ALAELGALCAA+TTEFENVSAKSLATLA QTFVAPAASGVSIAQDRTA
Sbjct: 61  DRLINAGYDDGPALAELGALCAAITTEFENVSAKSLATLAAQTFVAPAASGVSIAQDRTA 120

Query: 121 EKAFFTECGSQSGVLPAPHLVINSEADIDGLDANLLPGILKTARMGYDGKGQVRVRSVEE 180
           EKAFFTECGSQSGVLPAPHLVINSEADI+GLDANLLPGILKTARMGYDGKGQVRVRSVEE
Sbjct: 121 EKAFFTECGSQSGVLPAPHLVINSEADIEGLDANLLPGILKTARMGYDGKGQVRVRSVEE 180

Query: 181 VRNAFAAMKGVTCVLEKMLPLAYEVSVLVARGHDGQAVVYPIAENVHRDGILFTTTVPGP 240
           VR AFA+M GVTCVLEKMLPLAYEVSVLVARGHDGQAVVYPIAENVHRDGILFTTTVPGP
Sbjct: 181 VRAAFASMGGVTCVLEKMLPLAYEVSVLVARGHDGQAVVYPIAENVHRDGILFTTTVPGP 240

Query: 241 NIKADAAERAQQAALQIIGAMQYVGVLCIEFFVLEDGALVVNEMAPRPHNSGHYTIDACV 300
           NIKADAA RAQQAALQIIGA+QYVGVLCIEFFVLEDGALVVNEMAPRPHNSGHYTIDACV
Sbjct: 241 NIKADAAARAQQAALQIIGALQYVGVLCIEFFVLEDGALVVNEMAPRPHNSGHYTIDACV 300

Query: 301 TSQFEQQVRAMARLPLGDTRQHSPTVMLNILGDVWYEDDTDAQREPAWDQVLALPGAHLH 360
           TSQFEQQ RAMARLPLGDTRQHSP+VMLNILGDVWYE DTD QREPAWDQVLALPGAH+H
Sbjct: 301 TSQFEQQARAMARLPLGDTRQHSPSVMLNILGDVWYEGDTDTQREPAWDQVLALPGAHVH 360

Query: 361 LYGKAEARRGRKMGHVTFTGATLADAQRQLAAACAILGIAL 401
           LYGKAEARRGRKMGHVTFTGATLADAQ+QL AACAILGIAL
Sbjct: 361 LYGKAEARRGRKMGHVTFTGATLADAQQQLTAACAILGIAL 401


>gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide
           formyltransferase 2 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 403

 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 178/384 (46%), Gaps = 34/384 (8%)

Query: 10  RPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVADRLINAAYD 69
           R   P ++ AT + ++G G+LG+    A Q +G +V  ++   + P  QVA R       
Sbjct: 6   RLGTPLSSSATKVMLLGSGELGKEVIIALQRLGVEVIAVDRYENAPGHQVAHRAHVINMT 65

Query: 70  DGAALAEL--GALCAAVTTEFENVSAKSLATL--ALQTFVAPAASGVSIAQDRTAEKAFF 125
           DGAALA L        +  E E ++ ++L  L  A    V P A    +  +R   +   
Sbjct: 66  DGAALAALIEQEKPDLIVPEIEAIATETLVKLEEAGLARVIPTARAAWLTMNREGIRRL- 124

Query: 126 TECGSQSGVLPAPHLVINSEADID-GLDANLLPGILKTARMGYDGKGQVRVRSVEEVRNA 184
              G   G+  +P+   +S  ++   +D    P ++K   M   GKGQ ++   +E+ +A
Sbjct: 125 --AGETLGLATSPYRFADSLEELKAAIDQIGYPCVIKPV-MSSSGKGQSKIDGPDEIESA 181

Query: 185 --FAAMKGVT----CVLEKMLPLAYEVSVLVAR--GHDGQAVVY---PIAENVHRDGILF 233
             +AA  G       ++E  +   YE+++L  R    +G  V     PI  +V   G   
Sbjct: 182 WNYAAAGGRVDAGRVIVEGFIDFDYEITLLTVRSLNENGDTVTSFCDPIG-HVQVKGDYV 240

Query: 234 TTTVPGPNIKADAAERAQQAALQIIGAMQYVGVLCIEFFVLEDGALVVNEMAPRPHNSGH 293
            +  P P +   A E+A+  A ++   +  +G+  +E FV  D  +  +E++PRPH++G 
Sbjct: 241 ESWQPHP-MPGAALEKARDIARKVTENLGGLGLFGVELFVKGD-MVWFSEVSPRPHDTGM 298

Query: 294 YTIDACVTSQFEQQVRAMARLPLGDTRQHSPTVMLNILGDVWYEDDTDAQREPAWDQV-- 351
            T+ + V S+FE   +A+  LP+ +T   +P     I G           R  A+D V  
Sbjct: 299 VTMVSQVQSEFELHAKAILGLPV-NTALRTPGASAVIYGQ-------HEARGIAFDGVAE 350

Query: 352 -LALPGAHLHLYGKAEARRGRKMG 374
            L +PGA + L+GK E+   R+MG
Sbjct: 351 ALRIPGAEIRLFGKPESFARRRMG 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,130,778
Number of extensions: 43844
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,207,925
Effective search space: 379288450
Effective search space used: 379288450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)