BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0631.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310002|ref|YP_003774094.1| branched-chain amino acid amino...   601   e-173
gi|300314055|ref|YP_003778147.1| branched-chain amino acid amino...    93   2e-20

>gi|300310002|ref|YP_003774094.1| branched-chain amino acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  601 bits (1550), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/306 (93%), Positives = 299/306 (97%)

Query: 1   MSMADRDGKIWKDGALIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPEGTAIFRLKEHTQ 60
           MSMADRDGKIWKDG LIDWRDATVHVLTHTLHYGMGVFEGVRAYKTP+GTAIFRL+EHT+
Sbjct: 2   MSMADRDGKIWKDGELIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPDGTAIFRLQEHTR 61

Query: 61  RLFNSAKIFQMVVPFDQATLAEAQRQVVRENNLESCYIRPLIWIGSEKLGVSAKGNQIHV 120
           RL NSAKIFQM VP+D  TLA+AQRQVVREN LESCYIRPLIWIGSEKLGVSAKGNQIHV
Sbjct: 62  RLRNSAKIFQMEVPYDHDTLAQAQRQVVRENQLESCYIRPLIWIGSEKLGVSAKGNQIHV 121

Query: 121 AIAAWPWGAYLGEDGINKGIRVKTSSFTRHHVNVSLVRAKACGYYINSILANQEALADGY 180
           A+AAW WGAYLGEDG+NKGIRVKTSSF+RHHVNVSLVRAKACGYYINSILANQEALADGY
Sbjct: 122 AVAAWSWGAYLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINSILANQEALADGY 181

Query: 181 DEALLLDTEGYVSEGSGENVFIVKNGKIYTPDLASCLDGITRDAVLTMARDLGIEVIEKR 240
           DEALLLDTEGYVSEGSGENVFIVKNGKIYTPDLASCLDGITRDAVLTMARDLGIEVIEKR
Sbjct: 182 DEALLLDTEGYVSEGSGENVFIVKNGKIYTPDLASCLDGITRDAVLTMARDLGIEVIEKR 241

Query: 241 ITRDEMYCADEAFFTGTAAEVTPIRELDRRVIGNGARGPITEKLQSLFFDVVSGRAPQYR 300
           ITRDEMYCADEAFFTGTAAE+TPIRELDRRVIG+GARGP+TEKLQ+LFFDVV+GRAPQY+
Sbjct: 242 ITRDEMYCADEAFFTGTAAEITPIRELDRRVIGSGARGPVTEKLQTLFFDVVAGRAPQYK 301

Query: 301 HWLTLV 306
           HWLTLV
Sbjct: 302 HWLTLV 307


>gi|300314055|ref|YP_003778147.1| branched-chain amino acid
           aminotransferase/4-amino-4-deoxychorismate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score = 93.2 bits (230), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 11/280 (3%)

Query: 10  IWKDGALIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPEGTAIFRLKEHTQRLFNSAKIF 69
           ++ +G L    +A V VL     +G G++E +  Y    G   FR K+H  RLF S    
Sbjct: 6   VYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMY----GRKAFRGKQHLARLFRSLAGI 61

Query: 70  QMVVPFDQATLAEAQRQVVRENNLESCYIRPLIWIGSEKLGVSAKGNQIHVAIAAWPWGA 129
            +  P D+A   +   QVV+ N L+   I   +  G  K   +     +   +      A
Sbjct: 62  GIPNPHDEAGWMDLIDQVVQANGLQDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPMA 121

Query: 130 YLGEDGINKGIRVKTSSFTRHHVNVSLVRAKACGYYINSILANQEALADGYDEALLLDTE 189
                 + KG+   T    R  +N  +      G    ++LA Q A  +   EA+    +
Sbjct: 122 LPSAAMLEKGVACVTME-DRRWLNCQIKSTSLLG----NVLAAQFAAENEVTEAIQF-RD 175

Query: 190 GYVSEGSGENVFIVKNGKIYTPDLASC-LDGITRDAVLTMARDLGIEVIEKRITRDEMYC 248
           G++SE S  NV++VK+GKI  P   +  L+GI    +  +  + GI +  +RITR+E+  
Sbjct: 176 GFLSEASASNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIALESRRITREEVLA 235

Query: 249 ADEAFFTGTAAEVTPIRELDRRVIGNGARGPITEKLQSLF 288
           ADE   +  + EV P+  LD + +G+G  GP+  ++ + +
Sbjct: 236 ADELMISSASKEVLPVVTLDGQPVGSGRPGPVFARVYAAY 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 974,875
Number of extensions: 39432
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)