BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0612.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309982|ref|YP_003774074.1| hypothetical protein Hsero_0647...   152   8e-39

>gi|300309982|ref|YP_003774074.1| hypothetical protein Hsero_0647
           [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  152 bits (385), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 110/141 (78%), Gaps = 4/141 (2%)

Query: 1   MKRVWVLLLICLLPVQVFAAVLTYASSMAATDFSAPASVHATVAVQHLAAKPASLSDHHV 60
           MKR+WVLLLICLLPVQVFAAVLTYASSMAATDF+A        AVQHLA K  SLSD   
Sbjct: 1   MKRLWVLLLICLLPVQVFAAVLTYASSMAATDFAA-PVPVQAAAVQHLAGKTVSLSDQAA 59

Query: 61  HVVGSDQSHAVASDAGSSDDDSAGYADNGEDFSSHAGIGDEPVLIHSLAFAPQTSRLAPA 120
                  S A+ +D GSSD+DSAGY DNGEDFS+HAGIGDEPVLI SLA  PQ S LAPA
Sbjct: 60  ADD---ASQALLADNGSSDEDSAGYLDNGEDFSTHAGIGDEPVLIQSLAVVPQASSLAPA 116

Query: 121 LRSDAALQPPFLPRAGRPPRA 141
           L SDAALQPPFLPRAGRPPRA
Sbjct: 117 LSSDAALQPPFLPRAGRPPRA 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 420,906
Number of extensions: 14086
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)