BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0610.p (524 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 742 0.0 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 298 7e-82 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 241 1e-64 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 216 5e-57 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 212 6e-56 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/390 (94%), Positives = 378/390 (96%), Gaps = 2/390 (0%) Query: 137 MPQPPADDDRATLGTVQFRNDILHGSDVRIATLQVDLRRSAAQRAAQHEPRLATVQVGET 196 MPQPP D+DR+T+GTVQFRNDILHGSDVRIATLQVDLRRSAAQRAA EPRLATVQVGET Sbjct: 1 MPQPPPDEDRSTVGTVQFRNDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGET 60 Query: 197 LEKRAQLANEIIKGVILPQFVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPID 256 LEKRAQLANEIIKGVILPQF+ILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPID Sbjct: 61 LEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPID 120 Query: 257 SGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQGDQ 316 SGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQ DQ Sbjct: 121 SGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQ 180 Query: 317 DDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMVAVELNELARSVVQDWVPMS 376 DVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGM+ VELNELARSVVQDWVPMS Sbjct: 181 VDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMS 240 Query: 377 FTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGL 436 FTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGL Sbjct: 241 FTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGL 300 Query: 437 AILEVEDNGPGIPVAERANVFERFYRILGTPSTGS--GLGLAIVREIAQQHDAVLEITHN 494 AILEVEDNGPGIPVAERANVFERFYRILGTPSTGS GLGLAIVREIAQQH+A LEIT N Sbjct: 301 AILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLGLAIVREIAQQHEAALEITSN 360 Query: 495 PRCTDARYPGCVFRVSFRMMPRTPFFDDLT 524 PR TD +YPGCVFRVSFRMMPRTPFFDD+T Sbjct: 361 PRSTDPKYPGCVFRVSFRMMPRTPFFDDIT 390 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 298 bits (763), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 188/483 (38%), Positives = 281/483 (58%), Gaps = 25/483 (5%) Query: 41 SLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGKVV 100 SL +++ W+L PL LL + Y A +A+ +DR+L S LA++VS V+G V Sbjct: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 Query: 101 ARLPVSARDLLRADDIDNIYYRVTGPNGEYVEGDVDMPQPPADDDRATL--GTVQFRNDI 158 A +P A D D++ IYY+VTG NGE V G D+P P D R+ + V+F Sbjct: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 Query: 159 LHGSDVRIATLQVDLRRSAAQRAAQHEPRLATVQVGETLEKRAQLANEIIKGVILPQFVI 218 H VRIA L + + + +A +QVGET+E R + +I+ + Q + Sbjct: 130 YHDQPVRIAALLQPVYDDSIRG-------IALIQVGETMEGRNGMTRKILFDTLWRQGTL 182 Query: 219 LPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARL 278 + VA LVWFA+ L PL +L+ + +R P DLS D+ V +E+ PLV+++N + RL Sbjct: 183 VTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRL 242 Query: 279 SQTIAIQKRFIADAAHQMKTPLAGMRMQSELALR-----QGDQDDVRRSLEQLAKSSETA 333 I+ Q+RFIADA+HQ++TPL ++ QSEL LR Q D ++R +E +A++++ A Sbjct: 243 QALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAA 302 Query: 334 TRLVNQLLSLARAENQQSQSGGMVAVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPIL 393 L N+LL+LARAE+ ++ GG + + L++ AR V + + ++ I L FE+ + + Sbjct: 303 VHLANRLLTLARAEHGAAE-GGTMPLSLSDAARQVALELSQQAVSREIGLAFEE-EGDVS 360 Query: 394 ITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGG-GLAILEVEDNGPGIPVAE 452 I N ++L EL+ NLLDNA+ YTP G+ + VRA++ G +A+LEVED+GPGIP AE Sbjct: 361 IEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAE 420 Query: 453 RANVFERFYRILGTPST---GSGLGLAIVREIAQQHDAVLEITHNPRCTDARYPGCVFRV 509 R VFE FYR T G+GLGL+IVREIA H A + + A+ G V R+ Sbjct: 421 REKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLD-----APAQGSGLVVRI 475 Query: 510 SFR 512 F+ Sbjct: 476 VFQ 478 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 241 bits (614), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 165/481 (34%), Positives = 252/481 (52%), Gaps = 31/481 (6%) Query: 38 IQRSLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNG 97 + S+ ++L W++APLLL+ + +TY +A A FD+ L DS L QV Sbjct: 4 MHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQE 63 Query: 98 KVVARLPVSARDLLRADDIDNIYYRVTGPNGEYVEGDVDMPQPPADD--DRATLGTVQFR 155 + A L A +LR++ D ++ V G+ V GD PQ PA D DR + R Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMR 123 Query: 156 NDILHGSDVRIATLQVDLRRSAAQRAAQHEPRLATVQVGETLEKRAQLANEIIKGVILPQ 215 G VRIA +QV ++ + V V ET+ KR + I+ ++ Sbjct: 124 -----GEPVRIAAMQVRVKNG-----------VIWVAVAETIRKRDRAHYTILLSFLVLD 167 Query: 216 FVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDML 275 + ++ +V A+ RGL PL LQ+ + R L ID P E+ PL+ ++N+++ Sbjct: 168 GALTFASIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELM 227 Query: 276 ARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELAL-RQGDQDDVRRSLEQLAKSSETAT 334 AR+++ Q+ F+AD AHQ++TPL G+++Q EL + DQ D RSL + S E Sbjct: 228 ARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMI 287 Query: 335 RLVNQLLSLARAENQQSQSGGMVAVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILI 394 R QLL+LAR+E +S + + L++L VQ ++ + +RIDLGF+ P + Sbjct: 288 RQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDL--RPARL 345 Query: 395 TGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERA 454 G+ +L +L+ NL+DNA+ Y+P +G VTVR ++ +L VED+GPGI R Sbjct: 346 RGDRFLLSDLIDNLIDNAVRYSP--PHGTVTVRCLEEQDA--TVLSVEDSGPGIAPEHRE 401 Query: 455 NVFERFYRILGTPSTGSGLGLAIVREIAQQHDAVLEITHNPRCTDARYPGCVFRVSFRMM 514 +F+RFYR GSGLGLAIVREIA H V+ + C + + G +F V F + Sbjct: 402 LIFDRFYRA-NDKVAGSGLGLAIVREIAHDHGGVISVD----CKE-QGQGTIFTVRFPLA 455 Query: 515 P 515 P Sbjct: 456 P 456 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 216 bits (549), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 149/433 (34%), Positives = 228/433 (52%), Gaps = 19/433 (4%) Query: 53 PLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGKVVARLPVSARDLLR 112 P+ + +S + Y A S A DRAL S ++A QV +G V +P +A +L Sbjct: 16 PMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELFA 75 Query: 113 ADDIDNIYYRVTGPNGEYVEGDVDMPQPPADDDRATLGTVQFRNDILHGSDVRIATLQVD 172 + D +YY+V + + G D P P D A L V + +G +R+ + Sbjct: 76 SPAQDAVYYQVLMDDDTLLAGRPDFPAAP---DFAALYPV-YSTTSFNGKPLRVVSYI-- 129 Query: 173 LRRSAAQRAAQHEP--RLATVQVGETLEKRAQLANEIIKGVILPQFVILPVALALVWFAL 230 RA E R+ V VG+T++ R ++ ++ + Q V+L +A++LV L Sbjct: 130 -------RALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGL 182 Query: 231 SRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIA 290 + L PL L+ + RRPD L+P+ +G + +E+ P+V ++N + RL+ + +QKRF+A Sbjct: 183 TMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVA 242 Query: 291 DAAHQMKTPLAGMRMQSELALRQGDQDDVRRSLEQLAKSSETATRLVNQLLSLARAENQQ 350 DAAHQ++TPLA + Q + A + D V + L L + S + T L N+LL L++AE Sbjct: 243 DAAHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASD 302 Query: 351 SQSGGMVAVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLD 410 S + V+L ++ V+++ ++ + IDLG E ++ GN L +L NL+D Sbjct: 303 SSAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLID 362 Query: 411 NALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTG 470 NAL YTP G V + + + I+ V DNGPGIP R VFERFYR G Sbjct: 363 NALRYTPEGGKVTVGLEKKRSQ----MIITVSDNGPGIPAEVRERVFERFYRNAAPDQPG 418 Query: 471 SGLGLAIVREIAQ 483 SGLGLAIVREI Q Sbjct: 419 SGLGLAIVREIVQ 431 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 212 bits (539), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 148/456 (32%), Positives = 234/456 (51%), Gaps = 23/456 (5%) Query: 39 QRSLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGK 98 +RS+ +L W+++P+ L + Y N +DR L SV + + NG+ Sbjct: 8 RRSVRAYLLAWIISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENGE 67 Query: 99 VVARLPVSARDLLRADDIDNIYYRVTGPNGEYVEGDVDMPQPPADDDRATL--GTVQFRN 156 + A LP +A ++ AD + YR+ G +G++ +GD D+P D+ + Sbjct: 68 LKASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIYE 127 Query: 157 DILHGSDVRIATLQVDLRRSAAQRAAQHEPR-LATVQVGETLEKRAQLANEIIKGVILPQ 215 D +G VR+A L Q ++PR A VQV ET+E R+ LA +I ++ Q Sbjct: 128 DTYNGVPVRVAAL--------FQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQ 179 Query: 216 FVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDML 275 +L V +++ + + R L P+ L++++ R DDLSP+ P E+ P + +LN ++ Sbjct: 180 AALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLM 239 Query: 276 ARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQGDQDDVRRSLEQLAKSSETATR 335 ARL + + Q+RF+A+A+HQ++TPLA ++ Q + LR V ++++ + E AT Sbjct: 240 ARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPV--IWQEMSGTVERATT 297 Query: 336 LVNQLLSLARAENQQSQSGGMVAVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILIT 395 L NQLLSLA+ E Q G +L LAR D P+ + DL FE IL+ Sbjct: 298 LANQLLSLAKVE-QIRGRGAQEVCDLGMLARETAVDLSPLIAEK--DLDFELEAEKILVM 354 Query: 396 GNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERAN 455 G+P M+ EL+SNLL NA+ +TP G + + AR D +A L + D+G GI N Sbjct: 355 GHPWMIGELISNLLHNAIRHTPAQGRLGIRITARED----VAELLIWDSGEGIDDQAMEN 410 Query: 456 VFERFYRILGTPSTGSGLGLAIVREIAQQHDAVLEI 491 VF+ F S+ GLGL I EI A + + Sbjct: 411 VFKAFS---SNVSSAGGLGLTICGEIVDSMQATISL 443 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,422,268 Number of extensions: 57789 Number of successful extensions: 350 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 33 Length of query: 524 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 434 Effective length of database: 1,193,720 Effective search space: 518074480 Effective search space used: 518074480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)