BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0608.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine prote...   588   e-169
gi|300309975|ref|YP_003774067.1| transglutaminase-like superfami...    81   1e-16

>gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  588 bits (1515), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 279/311 (89%), Positives = 293/311 (94%)

Query: 1   MSERHVYRIHHQTTYQYSLPVRLSHQVLHLTPRELPWQHCLSHTVDVLPAPHLVRSYEDN 60
           MS+RHVYRIHHQTTYQY+LPVRLSHQVLHLTPRELPWQ CLSHTV++LP P LVRSYEDN
Sbjct: 1   MSDRHVYRIHHQTTYQYALPVRLSHQVLHLTPRELPWQACLSHTVNILPQPQLVRSYEDN 60

Query: 61  FGNVIKTFSLDTDHTSLDVQADSWVALTPRGQPQEVMRWDEAVTLMAYRGGQLMAPGMLE 120
           FGN+IK FSLDTDHTSLDVQADSWVAL+ RGQPQ  M WDEA   MAY GG++M PGMLE
Sbjct: 61  FGNIIKAFSLDTDHTSLDVQADSWVALSARGQPQAQMAWDEAAMQMAYHGGRVMMPGMLE 120

Query: 121 ASNFLFESSHVRIKREFIRYAAECFGPGMSVVEGVRALMLRIHEEFTFDPAATTVSTPVT 180
           ASNFLFESSHVRIKREFIRYAAECFGPG+SV+EGVR LMLRIHEEF FDPAATTVSTPVT
Sbjct: 121 ASNFLFESSHVRIKREFIRYAAECFGPGVSVLEGVRTLMLRIHEEFAFDPAATTVSTPVT 180

Query: 181 EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQERLIGADASHAWVSVYC 240
           EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQ RLIGADASHAWVSVYC
Sbjct: 181 EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQPRLIGADASHAWVSVYC 240

Query: 241 PGVDGTQGSWIDADPTNGIFPDTSHITLGWGRDFLDISPLRGVLIGGGQQSMQVAVTVLP 300
           PGV+G +GSWIDADPTNG+FPDTSHITLGWGRDFLDISPLRGVLIGGGQQSMQVAVTVLP
Sbjct: 241 PGVNGAEGSWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVLIGGGQQSMQVAVTVLP 300

Query: 301 GEEARGLQLSI 311
            EEA+GLQLSI
Sbjct: 301 AEEAQGLQLSI 311


>gi|300309975|ref|YP_003774067.1| transglutaminase-like superfamily
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1128

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 123/298 (41%), Gaps = 51/298 (17%)

Query: 9   IHHQTTYQYSLPVRLSHQVLHLTPRELPWQHCLSHTVDVLPAPHLVRSYEDNFGNVIKTF 68
           ++H T+Y+Y   + L  QV+ L P        LS+++ VLP PH +   +D   N +   
Sbjct: 7   LNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPESNYLARL 66

Query: 69  SLDTDHTSLDVQADSWVALTPRGQP--------QEVMRWDEAV----TLMAYRGGQLMAP 116
                 T   ++ D  VA      P         E   +D A      L+ YR    ++P
Sbjct: 67  VFPEKTTEFKIEVD-LVAEMSVINPFDFFLEPYAEQFPFDYAEDLQNELLPYRQKLPLSP 125

Query: 117 GMLEASNFLFESSHVRIKREFIRYAAECFGPGMSVVEGVRALMLRIHEEFTFDPAATTVS 176
                   LF      I RE +       G    +V   + L   I      +P    V 
Sbjct: 126 --------LFAQFLQSIPREKV-------GSANFLVALNQKLANHIGYTIRMEPG---VQ 167

Query: 177 TPVTEVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLT--------EPPPGQERLIG 228
           TP  E    + G C+D + L++  LR +GLAAR+VSGYL+         + P G E    
Sbjct: 168 TP-EETLELKSGSCRDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPE---- 222

Query: 229 ADAS--HAWVSVYCPGVDGTQGSWIDADPTNGIFPDTSHITLGWGRDFLDISPLRGVL 284
           AD +  HAW  VY PG       W+  DPT+G+F    HI L    +    +P+ G++
Sbjct: 223 ADFTDLHAWCEVYLPG-----AGWVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLV 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,095,241
Number of extensions: 48606
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)