BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0606.p (1127 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309975|ref|YP_003774067.1| transglutaminase-like superfami... 2183 0.0 gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine prote... 73 1e-13 >gi|300309975|ref|YP_003774067.1| transglutaminase-like superfamily domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1128 Score = 2183 bits (5656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1058/1128 (93%), Positives = 1085/1128 (96%), Gaps = 1/1128 (0%) Query: 1 MSIHVALNHVTSYSYDRAINLGPQVIRLRPAPHSRTRILSYSLRVSPQPHFINWQQDPES 60 MSIHVALNHVTSY YDRAINLGPQVIRLRPAPHSRTRILSYSLRV P+PHFINWQQDPES Sbjct: 1 MSIHVALNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPES 60 Query: 61 NYLARLVFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFEYAEDLQNELMPYRQK 120 NYLARLVFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPF+YAEDLQNEL+PYRQK Sbjct: 61 NYLARLVFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFDYAEDLQNELLPYRQK 120 Query: 121 LPLSPLFKEFLDSIPRAKVGSANFLVALNQKLAEHIGYTIRMEPGVQTPEETLELKSGSC 180 LPLSPLF +FL SIPR KVGSANFLVALNQKLA HIGYTIRMEPGVQTPEETLELKSGSC Sbjct: 121 LPLSPLFAQFLQSIPREKVGSANFLVALNQKLANHIGYTIRMEPGVQTPEETLELKSGSC 180 Query: 181 RDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDLHAWCEVYLPGAG 240 RDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDLHAWCEVYLPGAG Sbjct: 181 RDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDLHAWCEVYLPGAG 240 Query: 241 WVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLVDPCEVEFEHLMSVKRIWEAPRVTKP 300 WVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLVDPCEVEFEHLMSVKRIWEAPRVTKP Sbjct: 241 WVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLVDPCEVEFEHLMSVKRIWEAPRVTKP 300 Query: 301 YTEEQWAEIEQLGHAIDADLAANDVRLTMGGEPTFVSLDHPDEPEWNTAAMGPTKKPLAA 360 YTEEQWA+IE+LGHAIDADL ANDVRLTMGGEPTFVSLDHPDEPEWNTAAMGPTKKPLAA Sbjct: 301 YTEEQWADIEKLGHAIDADLHANDVRLTMGGEPTFVSLDHPDEPEWNTAAMGPTKKPLAA 360 Query: 361 ELYHRMRNKYAAQGLPHFGQGKWYPGEQLPRWALNCYWRRDGEPIWLNPALIGDETKPNV 420 ELYHRMRNKYAAQGLPHFGQGKWYPGEQLPRWALNCYWRRDGEPIWLNPALIGDET+PNV Sbjct: 361 ELYHRMRNKYAAQGLPHFGQGKWYPGEQLPRWALNCYWRRDGEPIWLNPALIGDETRPNV 420 Query: 421 ADKIVTSHFLHRVAQRLQVDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQERER 480 +DKIVTSHFLHRVAQRL+VDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQERER Sbjct: 421 SDKIVTSHFLHRVAQRLRVDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQERER 480 Query: 481 LMRVFTQGLQSAVGHVLPLARRDDGRGWQSGAWFLRSERCYLYPGDSPLGYRLPLDSLPW 540 LM+VFTQGLQSAVGHVLPLAR DG+GWQSGAWFLRSERCYLYPGDSPLGYRLPLDSLPW Sbjct: 481 LMKVFTQGLQSAVGHVLPLARSHDGQGWQSGAWFLRSERCYLYPGDSPLGYRLPLDSLPW 540 Query: 541 VKQGEYPATYPADPTQAFRPLPSSAEIRRQLGSPQEP-ARRQDASASMAASIAGAGKGKG 599 VK+GEYPA YPADPTQAFRPLP SAEIRRQ+GSPQEP A A + AA+ + A Sbjct: 541 VKEGEYPAVYPADPTQAFRPLPGSAEIRRQMGSPQEPLAGLGKAVSRAAAASSAATASTI 600 Query: 600 EAASVTSVASAADTAPAAFESANWITRTALCAEVRNGVFYLFMPPLSQLEHYLELVAAIE 659 + AS PA FESANW+TRTALCAEVRNGVFYLFMPPL+QLEHYLELVAAIE Sbjct: 601 SDMGRANAASPTQPVPAPFESANWLTRTALCAEVRNGVFYLFMPPLAQLEHYLELVAAIE 660 Query: 660 SVAEELKQPVLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTHLYDAAR 719 +VAEELKQPVLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTHLYDAAR Sbjct: 661 AVAEELKQPVLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTHLYDAAR 720 Query: 720 ASRLTTEKFMLDGHHSGTGGGNHMVLGGITTNDSPFLRRPDLLRSLISYWHNHPSLSYLF 779 ASRLTTEKFMLDGHHSGTGGGNHMVLGGITT+DSPFLRRPDLLRSLISYWHNHPSLSYLF Sbjct: 721 ASRLTTEKFMLDGHHSGTGGGNHMVLGGITTSDSPFLRRPDLLRSLISYWHNHPSLSYLF 780 Query: 780 SGMFIGPTSQAPRIDEARNDSTVEIELAFTEMDKQVARGDCPPWLVDRLLRNLLIDVTGN 839 SGMFIGPTSQAPRIDEARNDSTVEIELAF EMDKQVARGDCPPWLVDRLLRNLLIDVTGN Sbjct: 781 SGMFIGPTSQAPRIDEARNDSTVEIELAFNEMDKQVARGDCPPWLVDRLLRNLLIDVTGN 840 Query: 840 THRAEFCIDKMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWKEPYKPA 899 THRAEFCIDKMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWK+PYKPA Sbjct: 841 THRAEFCIDKMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWKQPYKPA 900 Query: 900 RLVRWGTELHDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCPKIGDYAVKG 959 RLVRWGTELHDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCPKIGDYAVKG Sbjct: 901 RLVRWGTELHDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCPKIGDYAVKG 960 Query: 960 MQIELRTALEPWHVLGEENTGGGTARYVDSSLERLQVKITGMASDRYVLTCNGVPVPLQP 1019 MQIELRTALEPWHVLGEE++GGGTARYVDSSLERLQVKI+GMASDRYVLTCNGV VPLQP Sbjct: 961 MQIELRTALEPWHVLGEESSGGGTARYVDSSLERLQVKISGMASDRYVLTCNGVSVPLQP 1020 Query: 1020 IGTVGQFVSGVRYRAWQPPSALHPTITVDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRNY 1079 GTVGQFV+GVRYRAWQPPSALHPTI VDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRNY Sbjct: 1021 TGTVGQFVAGVRYRAWQPPSALHPTIPVDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRNY 1080 Query: 1080 ETFPVNAFEAESRRLARYFRMNHTPGKLQVSPARASIEFPFTLDLRYF 1127 ETFPVNAFEAESRRLARYFRMNHTPGKLQV+PARASIEFPFTLDLRYF Sbjct: 1081 ETFPVNAFEAESRRLARYFRMNHTPGKLQVTPARASIEFPFTLDLRYF 1128 >gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine protease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 116/294 (39%), Gaps = 43/294 (14%) Query: 7 LNHVTSYSYDRAINLGPQVIRLRPAPHSRTRILSYSLRVSPQPHFINWQQDPESNYLARL 66 ++H T+Y Y + L QV+ L P LS+++ + PQP + +D N + Sbjct: 9 IHHQTTYQYALPVRLSHQVLHLTPRELPWQACLSHTVNILPQPQLVRSYEDNFGNIIKAF 68 Query: 67 VFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFEYAEDLQNELMPYRQKLPLSP- 125 T ++ D +S +P A+ A D M Y + P Sbjct: 69 SLDTDHTSLDVQADSWVALSARG------QPQAQM-----AWDEAAMQMAYHGGRVMMPG 117 Query: 126 -------LFKEFLDSIPRAKV-------GSANFLVALNQKLAEHIGYTIRMEPG---VQT 168 LF+ I R + G ++ + L I +P V T Sbjct: 118 MLEASNFLFESSHVRIKREFIRYAAECFGPGVSVLEGVRTLMLRIHEEFAFDPAATTVST 177 Query: 169 P-EETLELKSGSCRDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTD 227 P E + G C+D + L++ LR +GLAAR+VSGYL+ + P P D Sbjct: 178 PVTEVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLL-------TEPPPGQPRLIGAD 230 Query: 228 L-HAWCEVYLPG-----AGWVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLV 275 HAW VY PG W+ DPT+G+F HI L + +P+ G++ Sbjct: 231 ASHAWVSVYCPGVNGAEGSWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVL 284 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,863,969 Number of extensions: 178009 Number of successful extensions: 421 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 418 Number of HSP's successfully gapped: 2 Length of query: 1127 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1031 Effective length of database: 1,165,310 Effective search space: 1201434610 Effective search space used: 1201434610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)