BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0589.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309959|ref|YP_003774051.1| positive regulator of CheA prot...   301   2e-83
gi|300312285|ref|YP_003776377.1| CheW chemotaxis protein [Herbas...    90   1e-19
gi|300311028|ref|YP_003775120.1| chemotaxis signal transduction ...    77   1e-15

>gi|300309959|ref|YP_003774051.1| positive regulator of CheA protein
           activity protein [Herbaspirillum seropedicae SmR1]
          Length = 194

 Score =  301 bits (772), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/182 (89%), Positives = 171/182 (93%)

Query: 1   MPSVSLNGESARKRQQEEVIETRQFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQF 60
           MPSVSLNGES R+R QEEV+E+RQFLTFLVGTESFAMPIASIREIIEF GLTEVPLMP F
Sbjct: 1   MPSVSLNGESKRRRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAF 60

Query: 61  LRGVINLRGSVVPVIDLSVRFGRAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLG 120
           LRGVINLRGSVVPVIDLSVRFGRAPTV +KRTC+IIMEL Q++Q LLLGVMVDAVSAVL 
Sbjct: 61  LRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLS 120

Query: 121 IGVDQIEPRPSFGAGIRADFIAGMINVNERFIVVLDVPRVLSVDELASLLGMSAEDALGG 180
           IGVDQIEPRPSFGAGIRADF+  MINVNERF+VVLDVPRVLSVDELASLLGMSAEDALGG
Sbjct: 121 IGVDQIEPRPSFGAGIRADFVDAMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGG 180

Query: 181 VP 182
            P
Sbjct: 181 GP 182


>gi|300312285|ref|YP_003776377.1| CheW chemotaxis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score = 90.1 bits (222), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 91/152 (59%), Gaps = 4/152 (2%)

Query: 23  RQFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQFLRGVINLRGSVVPVIDLSVRFG 82
            +FL F +G E + + I  ++EI  +  +T +   P F++GV+NLRG +VP++D+ ++F 
Sbjct: 21  NEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIKFQ 80

Query: 83  RAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFGAGIRADFIA 142
                  + T VII+ +       ++G++VD+VS V+ +  +QI+P P  G    +D++ 
Sbjct: 81  LGEPTYDQFTVVIILNIGGR----VVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLI 136

Query: 143 GMINVNERFIVVLDVPRVLSVDELASLLGMSA 174
           G+  + +R ++++D+ +++S  E+  +  ++A
Sbjct: 137 GLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168


>gi|300311028|ref|YP_003775120.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 76.6 bits (187), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 7/148 (4%)

Query: 17  EEVIETRQFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQFLRGVINLRGSVVPVID 76
           +E I TRQF+TF+ G E FA+ +A ++EII    +  VPL P  L G+ NLRG ++P++ 
Sbjct: 20  QERIATRQFVTFVAGDEVFAVEMAPVQEIIRSPDVVRVPLAPPTLDGLANLRGKILPIVS 79

Query: 77  LSVRFGRAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFGAGI 136
           L   FG         T  +++ + Q      LG +VD V++VL +  D+IE      + I
Sbjct: 80  LRRIFGFPERDKDDATRAVVINVGQP-----LGFVVDRVASVLDVEADKIEAPEGLQSTI 134

Query: 137 RADFIAGMI-NVNER-FIVVLDVPRVLS 162
             + +AG++ NV     I+VLD  +++S
Sbjct: 135 DTELLAGLLKNVGGYPVIMVLDFEKLVS 162



 Score = 76.3 bits (186), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 8/155 (5%)

Query: 21  ETRQFLTFLVGTESFAMPIASIREIIEF-GGLTEVPLMPQFLRGVINLRGSVVPVIDLSV 79
           +  Q + F +  E F +PI S++EI+     L  VP  P F+ GVINLRGSV+PVIDL  
Sbjct: 367 DDEQMVIFRLDKEEFGVPIHSVQEIVRVPDELVHVPGAPAFVEGVINLRGSVLPVIDLRA 426

Query: 80  RFGRAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFGAGIRAD 139
           R G  P +       I++ ++ +   +  G +VD V+ VL I  D IEP P F     A 
Sbjct: 427 RLG-LPAIERSDGQRIMVFVIAD---VRTGFIVDQVAEVLRIAKDAIEPAPRFSTQQSA- 481

Query: 140 FIAGMINVNE--RFIVVLDVPRVLSVDELASLLGM 172
            +A M N+ +  R + +L+  ++++ DE+  L  +
Sbjct: 482 LLARMANMEKQGRMVQLLEPAQLINADEMTGLASL 516


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 541,095
Number of extensions: 20714
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)