BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0588.p (592 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 979 0.0 gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 386 e-108 gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 263 2e-71 gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 227 2e-60 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 224 2e-59 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/595 (83%), Positives = 538/595 (90%), Gaps = 3/595 (0%) Query: 1 MQESMSNRISIKQIFIWLAAGLSVLVAVVIGLTDMLKQANVALEDAHQSRYASTALANEL 60 M+E+M++R+SIKQ+FIWLA LS+LVAVV+ LT LK AN+ LE AHQSRY STALANEL Sbjct: 1 MRETMTHRMSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANEL 60 Query: 61 RRTTEDMTKFARAYVTTGDPNDEDRYYMILDIRNGKRPRPANYDRFNWDLVSARKLAAEG 120 RRT EDMTKFARAYVTTGDPNDEDRYYMI+DIRNGKR RP+NYDRFNWDLV+ARKLA + Sbjct: 61 RRTAEDMTKFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDP 120 Query: 121 SAQAVPLSELMKRAGFPEPELAKMQEALKLADQLSRIEITAFHAVKGEFDDGEGKFTVVG 180 A VPL ELMKRAGF + ELAKMQEALKL DQL++IEITAFHAVKGEFDDGEGK+TV+G Sbjct: 121 GAPGVPLGELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVIG 180 Query: 181 APNQAMAQELVFDQTYRTLFGRVMAPINDFLRQVDERTQARVIQAGTEYTRLEQKIFWLL 240 APNQAMAQELVFDQTYRTLFG++M+P+NDFLR VDERTQA V QAG +Y LEQKIFWLL Sbjct: 181 APNQAMAQELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLL 240 Query: 241 TASMVVLFVCLGFAYRTIRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKISVLYSTQ 300 AS+VVLF CL +YR IRSQIGGEPR+AMSVLRRVAEGDLTV VPL K DK+SVLYSTQ Sbjct: 241 AASVVVLFACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQ 300 Query: 301 QMVNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEITATIA 360 QM+NKWTDVIGDVSGTA++LASASEQISSSSQALSHN++QQAANVEETSASVEEITATIA Sbjct: 301 QMINKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIA 360 Query: 361 QNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAI 420 QNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAI Sbjct: 361 QNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAI 420 Query: 421 EAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSVGLAEKAGGLLNQMVPSIRK 480 EAARAGEHGKGFAVVAAEVRKLAER+Q+AAQEIIAVAE SVGLAEKAGGLLNQMVPSIRK Sbjct: 421 EAARAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRK 480 Query: 481 TADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEELSATSEEMSAQAIHLQDL 540 TADLVQEIAAAS EQSTGLEQINNAVHQMAQTTQMTA+ASEELSATSEEMSAQAIHLQDL Sbjct: 481 TADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDL 540 Query: 541 MRFFRVGEMQKLPARGRSNNGRAP---KQEPPRRLSMLDVEDDEPGVDESAFKRF 592 MRFF+VGE +K R P K + RRLSMLD +DE GVDES+FKRF Sbjct: 541 MRFFQVGEPRKNAPRASKAVPLPPSGGKSDSVRRLSMLDAPEDERGVDESSFKRF 595 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 386 bits (991), Expect = e-108, Method: Compositional matrix adjust. Identities = 225/561 (40%), Positives = 340/561 (60%), Gaps = 20/561 (3%) Query: 1 MQESMSNRISIKQIFIWLAAGLSVLVAVVIGLTDMLKQANVALEDAHQSRYASTALANEL 60 M+ S+ +R SI+QIFI L A ++VL+ +++ + + + L A++SRYAS LA EL Sbjct: 1 MKISLVSRFSIRQIFIMLTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATEL 60 Query: 61 RRTTEDMTKFARAYVTTGDPNDEDRYYMILDIRNGKRPRPANYDRFNWDLVSAR-KLAAE 119 R++++D+T+ AR YV TGDP+ E +Y ILDIRNGK+ RP +Y R WD V+A K Sbjct: 61 RQSSDDLTRLARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRP 120 Query: 120 GSAQAVPLSELMKRAGFPEPELAKMQEALKLADQLSRIEITAFHAVKGEFDDGEGKFTVV 179 S Q V L++LM+ AGF E+ K++EA +D L + E+ A + VKG + D +G FT Sbjct: 121 DSNQHVALTDLMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKR 180 Query: 180 GAPNQAMAQELVFDQTYRTLFGRVMAPINDFLRQVDERTQARVIQAGTEYTRLEQKIFWL 239 P+ A A+EL+ + Y ++M P+++F +D RT +V A + T + + L Sbjct: 181 ADPDLAQARELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSL 240 Query: 240 LTASMVVLFVCLGFAYRTIRSQIGGEPREAMSVLRRVAEGDLTVTV-PLRKRDKISVLYS 298 + ++VVL L Y IR+ + A SV RRVA GDLT + P K + +L + Sbjct: 241 IAIALVVLACTLMLVYHAIRNPLA----HAASVARRVAHGDLTAQIDPAIKGETGELLEA 296 Query: 299 TQQMVNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEITAT 358 M + ++ DV A + +++ +I+S + LS + QQA+++EET++S+EE+T+T Sbjct: 297 LTIMQSGLQTIVLDVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTST 356 Query: 359 IAQNADNARTTDGIASLSASAATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQT 411 + QNA NAR +A+ ++ A GGE V V M K+I I +ID IA+QT Sbjct: 357 VKQNAGNARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQT 416 Query: 412 NLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSVG-------LA 464 N+LALNAA+EAARAGE G+GFAVVA EVR LA+R+ AA+EI + +NSV L Sbjct: 417 NILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLV 476 Query: 465 EKAGGLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEELS 524 +AG + ++V S+++ +++ I+ AS EQ++G+EQI A++QM Q TQ AA E+ S Sbjct: 477 NEAGSTMREVVESVQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQAS 536 Query: 525 ATSEEMSAQAIHLQDLMRFFR 545 A SE M QA L DL+ F+ Sbjct: 537 AASESMQMQAHKLTDLVGAFK 557 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 263 bits (673), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/313 (47%), Positives = 219/313 (69%), Gaps = 3/313 (0%) Query: 246 VLFVCLGFAY---RTIRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKISVLYSTQQM 302 VL + LG + RT+ Q+GGEP + ++V++R+++GDL T+ L+ + S++++ Q+M Sbjct: 203 VLLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQTITLKPGCRDSMMHAIQKM 262 Query: 303 VNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEITATIAQN 362 + + V+G+V G A L S +E++S+++Q+LS S++QA VE+TS ++ +I A + Sbjct: 263 MTRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTEQANGVEQTSEALAQIHALLQST 322 Query: 363 ADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEA 422 A NAR TD IA+ +A A + E V++ VAA++QIA KI +IDDIAYQTNLLALNA IEA Sbjct: 323 AQNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGKIAVIDDIAYQTNLLALNATIEA 382 Query: 423 ARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSVGLAEKAGGLLNQMVPSIRKTA 482 A AGEHG GFAVVAAEVR+LAER+Q+AAQEI VA +V LA A L+ MVP+I +T+ Sbjct: 383 AHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARANVTLACAAERQLSDMVPTITRTS 442 Query: 483 DLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEELSATSEEMSAQAIHLQDLMR 542 LVQ+I +S +QST + QI+ A Q+AQ Q + +SEEL+ TSEE++ +A+ LQ + Sbjct: 443 VLVQDIVQSSEQQSTAVSQISTAASQLAQVIQQNSLSSEELAVTSEELNRRALLLQTAVG 502 Query: 543 FFRVGEMQKLPAR 555 FF+ + + AR Sbjct: 503 FFQCQLARGMQAR 515 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 139/329 (42%), Positives = 212/329 (64%), Gaps = 1/329 (0%) Query: 224 QAGTEYTRLEQKIFWLLTASMVVLFVCLGFAYRTIRSQIGGEPREAMSVLRRVAEGDLTV 283 +A EY RL + ++ + + +R ++GGEP A ++R++A+G+L V Sbjct: 204 EARNEYQRLRTHNLEIAGLTLALGLALALWIIAGVRRELGGEPAYAADIVRQIADGNLCV 263 Query: 284 TVPLRKRDKISVLYSTQQMVNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAA 343 V LR D+ S+LY+ M + T+++ +V+ + AL +S Q+++++ AL+ SS+QAA Sbjct: 264 EVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLSTQALGVSSRQLNATAHALAQASSEQAA 323 Query: 344 NVEETSASVEEITATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGI 403 VEE ++ + I Q ++AR T+ IA +AS A + G AV+ TV AM+ IA ++G+ Sbjct: 324 AVEEVHGAIASMNQAIQQTGEHARRTNQIAVAAASDADKSGAAVQTTVDAMRGIARQVGV 383 Query: 404 IDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSVGL 463 IDDIAYQTNLLALNAAIEAARAGEHG+GF+VVAAEVRKLAER+Q++A EI +A+ SV L Sbjct: 384 IDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEVRKLAERSQSSAHEISVIAQQSVEL 443 Query: 464 AEKAGG-LLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEE 522 AE+ L+ + IR+ + + +I +S Q G+ +I AV Q+ TTQ AAASEE Sbjct: 444 AEQTSQRLVEGTLQGIRQASQQINQITLSSRMQEEGVAEIGVAVTQLNDTTQRNAAASEE 503 Query: 523 LSATSEEMSAQAIHLQDLMRFFRVGEMQK 551 L+ T+E M+ +A L + +FR+ + Q+ Sbjct: 504 LAITAEAMAERARELNAQLAYFRLEQSQQ 532 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 224 bits (570), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 135/335 (40%), Positives = 212/335 (63%), Gaps = 15/335 (4%) Query: 238 WLLTASMVVLFVCLGF-AYRTIRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKISVL 296 W L A V+L V F R++ Q+GGEP +A + ++A+G+L V++PL K D+ S++ Sbjct: 194 WTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLM 253 Query: 297 YSTQQMVNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEIT 356 S + M + T ++ + +A ++++A+ QI+ + LS + +QAA++EET++S+EEIT Sbjct: 254 ASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEIT 313 Query: 357 ATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASK-------IGIIDDIAY 409 +T+ QN NA +A ++ A +GGE V V MK I+ I ++ IA+ Sbjct: 314 STVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAF 373 Query: 410 QTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSV-------G 462 QTN+LALNAA+EAARAGE G+GFAVVA EVR LA+R+ ++A+EI + E+SV Sbjct: 374 QTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLIESSVQHVEAGQK 433 Query: 463 LAEKAGGLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEE 522 L ++AG ++++V SI++ DL+ EI AAS EQS+G+ QIN A+ QM + TQ AA EE Sbjct: 434 LVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMDEVTQQNAALVEE 493 Query: 523 LSATSEEMSAQAIHLQDLMRFFRVGEMQKLPARGR 557 ++ ++ M+ QA L+D + FR+ + Q A R Sbjct: 494 SASAAQSMAQQANSLRDAVAVFRIEQPQPAVAYPR 528 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,433,330 Number of extensions: 52663 Number of successful extensions: 616 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 71 Length of query: 592 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 501 Effective length of database: 1,188,985 Effective search space: 595681485 Effective search space used: 595681485 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)