BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0581.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309952|ref|YP_003774044.1| 3-methyl-2-oxobutanoate hydroxy...   541   e-155

>gi|300309952|ref|YP_003774044.1| 3-methyl-2-oxobutanoate
           hydroxymethyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 275

 Score =  541 bits (1395), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/275 (94%), Positives = 272/275 (98%)

Query: 1   MAGYLQESGAVRAKPVTTHTLQALRAKGEKITMLTCYDASFATLMERAGLETVLIGDSLG 60
           MAGYLQESGA RAKPVTTHTLQA+RAKG+KI+MLTCYDASFATLMERAGL+TVLIGDSLG
Sbjct: 1   MAGYLQESGAARAKPVTTHTLQAMRAKGDKISMLTCYDASFATLMERAGLDTVLIGDSLG 60

Query: 61  MVSQGHDSTLPVTIQDMAYHTAAVARGTRTMLIIADLPFGTYPSREDAFRNAALLMQAGA 120
           MV QGHDSTLPVTIQD+AYHTAAVARGTRTMLIIADLPFGTYP+RE+AFRNAALLMQAGA
Sbjct: 61  MVCQGHDSTLPVTIQDVAYHTAAVARGTRTMLIIADLPFGTYPTREEAFRNAALLMQAGA 120

Query: 121 QMIKLEGGVWLADTIKFLTERGIPVCAHIGLTPQSVHQLGGFKVQGKTSDGATQLHADAL 180
           QMIKLEGGVWLADTIKFLTERGIPVCAHIGLTPQSVHQLGGFKVQGKTSDGATQLHADAL
Sbjct: 121 QMIKLEGGVWLADTIKFLTERGIPVCAHIGLTPQSVHQLGGFKVQGKTSDGATQLHADAL 180

Query: 181 AVQQAGASLVVIEAVPAALGKEVTDRLAVPTIGIGAGPDCSGQVLVMHDMLGVFPGHKSR 240
           AVQQAGASLVVIEAVPA LGKEVTDRL++PTIGIGAGPDCSGQVLVMHDMLGVFPGHKSR
Sbjct: 181 AVQQAGASLVVIEAVPATLGKEVTDRLSIPTIGIGAGPDCSGQVLVMHDMLGVFPGHKSR 240

Query: 241 FVRNFMEGASGIEDAVRRYVAAVKDGSFPAQEHCF 275
           FVRNFM+GASGIE+AVRRYVAAVKDGSFPAQEHCF
Sbjct: 241 FVRNFMDGASGIEEAVRRYVAAVKDGSFPAQEHCF 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 895,575
Number of extensions: 38129
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)