BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0577.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309949|ref|YP_003774041.1| heat shock protein 24 (HSP-70 c...   283   5e-78

>gi|300309949|ref|YP_003774041.1| heat shock protein 24 (HSP-70
           cofactor)protein [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  283 bits (725), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 175/194 (90%), Positives = 181/194 (93%), Gaps = 5/194 (2%)

Query: 1   MQDIEKQEAQSVQQEPQAADTAAAATGAANAAEQAAAAAPAEPTLEEKLAAAEAKAAEMQ 60
           MQD+EKQEAQSVQQ     D  AA   AA AAEQAA AA AEPTLE+KLAAAEAKAAE+Q
Sbjct: 1   MQDMEKQEAQSVQQ-----DNQAADAAAATAAEQAAPAAAAEPTLEDKLAAAEAKAAELQ 55

Query: 61  DAFLRARAEGENIRRRAQEDIAKAHKFAIEGFAESLLAVKDSLEMALKIENASLESLKEG 120
           DAFLRARAEGENIRRRAQEDIAKAHKFAIEGFAESLLAVKDSLEMALKIENASLESLKEG
Sbjct: 56  DAFLRARAEGENIRRRAQEDIAKAHKFAIEGFAESLLAVKDSLEMALKIENASLESLKEG 115

Query: 121 VDMTLKQLTSAFEKNKLQEVSPQAGEKLDPMKHQAVSAVPAEQEANTVVAVLQKGYMISE 180
           VDMTLKQL+SAFEKNKLQEV+PQAG+KLDPMKHQAVSAVPAEQEANTVVAVLQKGYMISE
Sbjct: 116 VDMTLKQLSSAFEKNKLQEVNPQAGDKLDPMKHQAVSAVPAEQEANTVVAVLQKGYMISE 175

Query: 181 RLLRPALVTVAQGK 194
           RLLRPALVTVAQGK
Sbjct: 176 RLLRPALVTVAQGK 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.119    0.299 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 342,783
Number of extensions: 10164
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 128 (53.9 bits)