BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0575.p
         (369 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum ...   682   0.0  

>gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/367 (89%), Positives = 353/367 (96%)

Query: 1   MAFRKEPPYTHGSPASTAVVLVNLGTPDAPHAGALRRYLKQFLSDPRVVEIPRAVWWVIL 60
           MAFR EP +THGS ASTA+VLVNLGTPDAP+A ALRRYL QFLSDPRVVEIPRAVWW IL
Sbjct: 1   MAFRTEPKHTHGSSASTAIVLVNLGTPDAPNAPALRRYLGQFLSDPRVVEIPRAVWWFIL 60

Query: 61  NGIILPFRSSKSAEKYASIWTAEGSPLRVHTQRQAAALGVQLAARGHHQLQVVYAMRYGT 120
           NG+ILPFRSSKSAEKYASIWT +GSPLRVHT+RQAAALG QLAARGHHQLQVV+AMRYG+
Sbjct: 61  NGVILPFRSSKSAEKYASIWTEQGSPLRVHTERQAAALGAQLAARGHHQLQVVHAMRYGS 120

Query: 121 PSLPQVLDQLKEQGCSRILVLPAYPQYSGTTTASIFDAVFDHYRQVRNIPELRLIRNYHD 180
           PSLPQVLDQLK+QGC+RILVLPAYPQYSGTTTASIFDAVFDHYR+VRNIPELRLIRNYHD
Sbjct: 121 PSLPQVLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYRKVRNIPELRLIRNYHD 180

Query: 181 QDGYLQALRQSVLDHWEINGRPDKLLMSFHGVPKRTLMLGDPYHCECYKTARLLAQALGL 240
           QDGY+QALRQSVLDHWE+NGRPDKL+MSFHGVPKRTL LGDPYHCECYKTARLLAQ+LGL
Sbjct: 181 QDGYIQALRQSVLDHWEVNGRPDKLVMSFHGVPKRTLELGDPYHCECYKTARLLAQSLGL 240

Query: 241 NEDQYMVTFQSRFGKAEWLQPYTAPTAQELGRQGVRRIDVMCPGFTSDCLETLEEIAMEV 300
           N++QY+VTFQSRFGKAEWLQPYTAPT Q LGRQGVRRIDVMCPGFTSDCLETLEEIAMEV
Sbjct: 241 NDEQYLVTFQSRFGKAEWLQPYTAPTVQALGRQGVRRIDVMCPGFTSDCLETLEEIAMEV 300

Query: 301 KQDFLHAGGKEFHFIPCLNESPAWIAGMVELVEQHLAGWPTMSNAAAREEMARQAVIAAE 360
           K +FLHAGGKEFHFIPCLNESPAWIAGMVE+VEQHLAGWPTMSNAAARE+MA+ A I+AE
Sbjct: 301 KDEFLHAGGKEFHFIPCLNESPAWIAGMVEIVEQHLAGWPTMSNAAAREQMAQDAAISAE 360

Query: 361 RAKALGA 367
           RAKALGA
Sbjct: 361 RAKALGA 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,206,965
Number of extensions: 51013
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,207,925
Effective search space: 340634850
Effective search space used: 340634850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)