BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0574.p
         (548 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspiril...  1033   0.0  

>gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspirillum
           seropedicae SmR1]
          Length = 548

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/548 (96%), Positives = 538/548 (98%)

Query: 1   MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALAMGGRGDPSVVREGAA 60
           MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALA+GGRGDPSVVREGAA
Sbjct: 1   MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRGDPSVVREGAA 60

Query: 61  KADVSADFTATPEVMAWLQEQELAAEHDGVLLRRVIDNAGRSKAYINGSAATAAQLRQVG 120
           KADVSADF+ATPEV AWL+E E A EH GVLLRRVIDNAGRSKAYINGSAATAAQLR+VG
Sbjct: 61  KADVSADFSATPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQLREVG 120

Query: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQFEQDAR 180
           EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQFEQDAR
Sbjct: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQFEQDAR 180

Query: 181 NVLLERERLEWQVAELHKLAVKPGEWAEISAEHSRLSHAAALIGGAQEALGVISESESPI 240
           NVLLERERLEWQVAELHKLAVKPGEWAEIS EHSRLSHAAALI GAQEALGVISESESPI
Sbjct: 181 NVLLERERLEWQVAELHKLAVKPGEWAEISTEHSRLSHAAALISGAQEALGVISESESPI 240

Query: 241 LSQLSSITQKLSKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVE 300
           LSQLSSITQKL+KLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVE
Sbjct: 241 LSQLSSITQKLTKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVE 300

Query: 301 ERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRVQEEKLKAAYLTLAQK 360
           ERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALR QE+KL+ AYL LAQK
Sbjct: 301 ERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRAQEDKLRQAYLALAQK 360

Query: 361 LSKARAKAAASLGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAGHAGVAPR 420
           LSKARAKAAA+LGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAGHAGVAPR
Sbjct: 361 LSKARAKAAAALGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAGHAGVAPR 420

Query: 421 ALAKVASGGELARISLAISVIASAATTVPTLIFDEVDSGIGGAVAEVVGRLLKRLGQERQ 480
           ALAKVASGGELARISLAISVIASAAT++PTLIFDEVDSGIGGAVAEVVGRLLKRLGQ+RQ
Sbjct: 421 ALAKVASGGELARISLAISVIASAATSIPTLIFDEVDSGIGGAVAEVVGRLLKRLGQDRQ 480

Query: 481 VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDAKARVEEIARMLGGLEITATTRK 540
           VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDAKARVEEIARMLGGLEITATTRK
Sbjct: 481 VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDAKARVEEIARMLGGLEITATTRK 540

Query: 541 HARELLAS 548
           HARELLAS
Sbjct: 541 HARELLAS 548


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,589,785
Number of extensions: 64173
Number of successful extensions: 432
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 458
Effective length of database: 1,193,720
Effective search space: 546723760
Effective search space used: 546723760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)