BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0572.p
         (245 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309945|ref|YP_003774037.1| phosphatase (HAD superfamily) [...   437   e-124

>gi|300309945|ref|YP_003774037.1| phosphatase (HAD superfamily)
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  437 bits (1125), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/245 (90%), Positives = 230/245 (93%), Gaps = 3/245 (1%)

Query: 1   MKPSASSLPPSTAPAAPAPIQAVLFDLDDTLWAIEPVLVRAEGLLYDWLREHAPAVVAAH 60
           MKPSAS+LP S  PAA +PIQAVLFDLDDTLWAIEPVLVRAE LLYDWLR+HAPAV AAH
Sbjct: 1   MKPSASTLPAS--PAA-SPIQAVLFDLDDTLWAIEPVLVRAETLLYDWLRQHAPAVAAAH 57

Query: 61  TIASLRERRMALMQTDPAYRIDLWKLRHTALSQVFREHDVDLALVDPAMALFSEARSTVA 120
           TIASLRERRMALMQTDPAYRI+LWKLRHTALS+VFREHDVDLALVDPAMALFSEARSTVA
Sbjct: 58  TIASLRERRMALMQTDPAYRINLWKLRHTALSEVFREHDVDLALVDPAMALFSEARSTVA 117

Query: 121 LFDDVEPALLRLKGKLTLGSVSNGFADLERIGLAQHFGVSIAAHRFGRAKPDPAIFHAAC 180
           LFDDVEPALLRLKGKLTLGSVSNGFADLERIGLA HFGVSIAAHRFGRAKPDPAIFHAAC
Sbjct: 118 LFDDVEPALLRLKGKLTLGSVSNGFADLERIGLAGHFGVSIAAHRFGRAKPDPAIFHAAC 177

Query: 181 AALQAAPAATVYVGDDPLLDVQGAQQAGLRAVWMNRFDRTLPAGILPDAICRDLHELHDW 240
            ALQ AP ATVYVGDDPLLDVQGAQQAGL+AVWMNRF R LP  I PDA+CRDLHELHDW
Sbjct: 178 EALQVAPGATVYVGDDPLLDVQGAQQAGLKAVWMNRFGRVLPEDIRPDAVCRDLHELHDW 237

Query: 241 LQAQA 245
           L+AQ+
Sbjct: 238 LEAQS 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 748,382
Number of extensions: 29363
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,226,865
Effective search space: 198752130
Effective search space used: 198752130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)