BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0564.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309937|ref|YP_003774029.1| cAMP phosphodiesterase [Herbasp...   521   e-149

>gi|300309937|ref|YP_003774029.1| cAMP phosphodiesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 273

 Score =  521 bits (1342), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 248/273 (90%), Positives = 259/273 (94%)

Query: 1   MILGQISDLHIKTDGKKSYRVVDTAESLRRCVAQVNSLKQRPDVLIITGDLVDFGKPSEY 60
           MILGQISDLHIKTDGKKSYRVVDTAESLRRCVAQVN LKQRPD L+ITGDLVDFGKPSEY
Sbjct: 1   MILGQISDLHIKTDGKKSYRVVDTAESLRRCVAQVNGLKQRPDALVITGDLVDFGKPSEY 60

Query: 61  ACLRELLAPLTMPYYLLPGNHDERNALRAAFPEHAYLQQGGERIEYVIEDYPVRLIALDS 120
           ACLRELLAPL MPYYLLPGNHDERNALRAAFP+HAYLQQGGERIEYVIED+PVR+IALD+
Sbjct: 61  ACLRELLAPLAMPYYLLPGNHDERNALRAAFPDHAYLQQGGERIEYVIEDHPVRIIALDT 120

Query: 121 VIPRASGGELSAASLLWLDEVLAQQPQRPTVVAMHHPPFTTGIGHMDDMGLANPAALEAV 180
           VIPR SGG LS  SL WLDEVLAQQ QRPTV+AMHHPPFTTGIGHMDDMGLA+P ALEAV
Sbjct: 121 VIPRQSGGALSPQSLQWLDEVLAQQAQRPTVIAMHHPPFTTGIGHMDDMGLADPQALEAV 180

Query: 181 VRKHPQVERILCGHLHRSIQRRFGGTLASTCPGVSHQVQLDLDPQAPSCFVMEPPGYQLH 240
           VRKHPQVERILCGHLHRSIQRRFGGTLA+TCPGVSHQVQLDLD QAPSCFVMEPPG+QLH
Sbjct: 181 VRKHPQVERILCGHLHRSIQRRFGGTLATTCPGVSHQVQLDLDAQAPSCFVMEPPGFQLH 240

Query: 241 WWDAATSSLVSHTAFIGQFDGPYPFYDGDELID 273
           WWD A  SLVSHTAFIG+F+GPYPFYDGDELID
Sbjct: 241 WWDEAARSLVSHTAFIGEFEGPYPFYDGDELID 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 968,922
Number of extensions: 41796
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)