BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0563.p (364 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 656 0.0 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 243 3e-65 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 240 2e-64 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 235 3e-63 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 231 5e-62 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/364 (89%), Positives = 338/364 (92%), Gaps = 3/364 (0%) Query: 1 MKSNQQAVSIRLQQCAKSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLE 60 MKS+Q+AVSIRL QCAKSFANGTRALQPLDL IHPGETLVLLGPSGCGKTTTLRMIAGLE Sbjct: 1 MKSHQEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLE 60 Query: 61 FPDMGGRVFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAE 120 FPD GGRV FG+EDVT LPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKI A ERAE Sbjct: 61 FPDEGGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAE 120 Query: 121 RVESLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAV 180 RVE LLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAV Sbjct: 121 RVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAV 180 Query: 181 RSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVAD 240 RSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPAN+FVA+ Sbjct: 181 RSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAE 240 Query: 241 FIGAMNRVHGIVSGDRLLLPTGSLPLVDTLDAALQGQPACAMFRPEDVEVVDITEADAQC 300 FIGAMNRV GIV+GDRL LPTG+LPL A+ GQPA A+FRPEDVEV+DITEADA C Sbjct: 241 FIGAMNRVDGIVAGDRLQLPTGTLPLPPD---AVAGQPAQALFRPEDVEVIDITEADAHC 297 Query: 301 VRGKLINTFFLGDRTRFEIEIGVERPVIAETSRRGWWQAGQQIGIRVSAEALVKLAPRAE 360 +RGKLINTFFLGDRTRFEIEIG ERPVIAETSRRGWW+AGQQI IRV A ALV +APRA Sbjct: 298 LRGKLINTFFLGDRTRFEIEIGAERPVIAETSRRGWWEAGQQIAIRVPATALVTMAPRAA 357 Query: 361 KENA 364 KE A Sbjct: 358 KETA 361 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 243 bits (619), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 132/334 (39%), Positives = 192/334 (57%), Gaps = 8/334 (2%) Query: 6 QAVSIRLQQCA--KSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPD 63 Q + +Q C K++ ++ LDLDI GE L LLGPSG GKTT L M+AG EFP Sbjct: 16 QQSDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFP- 74 Query: 64 MGGRVFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAERVE 123 GG + + + +P KR +GMVFQNYALFP+M++ +N+AY + +RK+ A R +V+ Sbjct: 75 TGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVK 134 Query: 124 SLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSD 183 L+MV + R QLSGGQ+QRVALAR L +P+++L+DEPL ALD +LRE ++ + Sbjct: 135 QALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLE 194 Query: 184 LNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADFIG 243 L L + LG+T +YVTHDQ EA+ + DR+ V ++G I Q+ E+Y +P N+FVA+FIG Sbjct: 195 LKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIG 254 Query: 244 AMNRVHGIVSGDR-----LLLPTGSLPLVDTLDAALQGQPACAMFRPEDVEVVDITEADA 298 NR G V + + L G+ + A GQ A RPE + + A+ Sbjct: 255 DNNRFKGSVESVQGEHCTVRLTDGAALTGLNVHRAHAGQSITACVRPERIRLAAGGSAEP 314 Query: 299 QCVRGKLINTFFLGDRTRFEIEIGVERPVIAETS 332 +R + + GD R + + + S Sbjct: 315 NSIRASIAGLIYFGDHVRVRCTVAGQEDCFVKLS 348 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 240 bits (612), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 127/249 (51%), Positives = 174/249 (69%), Gaps = 10/249 (4%) Query: 8 VSIRLQQCAKSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMGGR 67 +SI + K F + T AL + L+ GE LLGPSGCGKTT LR+IAGLE PD G+ Sbjct: 1 MSIEVHHIQKRFGSFT-ALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPD-SGQ 58 Query: 68 VFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERA------ER 121 V ED +A + +R VG VFQ+YALF +M+V ENIA+G++++ P ++R E+ Sbjct: 59 VLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVK--PRSQRPSEAVIREK 116 Query: 122 VESLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVR 181 V+ LLE+V L L+ R QLSGGQ+QR+ALARALA+EPRVLLLDEP ALDAK+R+ +R Sbjct: 117 VKRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 182 SDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADF 241 L +L L +T+I+VTHDQ EA+ + D++V+M +G++ QIGTP+ +Y HPA+ FV F Sbjct: 177 RWLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGF 236 Query: 242 IGAMNRVHG 250 +G +N HG Sbjct: 237 LGNVNLFHG 245 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 235 bits (600), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 134/304 (44%), Positives = 190/304 (62%), Gaps = 9/304 (2%) Query: 20 ANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFP-----DMGGRVFFGDED 74 A+ L+ + +++ GE + LLGPSG GKTT LR +AGLE P D+G R F Sbjct: 17 AHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGAR 76 Query: 75 VTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAERVESLLEMVHLQGL 134 +P E+R +G+VFQ+YAL+P+ +V +N+AYG+K+RK P+ E A RV+++L + L L Sbjct: 77 NFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLGLGHL 136 Query: 135 SHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGIT 194 R QLSGGQ+QRVA+ARAL P+V+LLDEPL+ LDAKLRE R+ L +L+ LG++ Sbjct: 137 GERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLS 196 Query: 195 AIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADFIGAMNRVHGIV-- 252 A+ VTHDQGEAMA+ DRI+++ G+I Q GTPQ +Y P F A+F+G+ N++ V Sbjct: 197 ALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMGSNNKLAAEVLS 256 Query: 253 -SGDRLLLPTGSLPLVDTLDAALQGQPACAMFRPEDVEVVDIT-EADAQCVRGKLINTFF 310 G+R+ + V TL +P + VE V I+ EA +R L + Sbjct: 257 REGERVTVKLDGGTAVATLRGRSDVRPGEQLTGIIRVEQVRISGEASDNAIRLPLSTCMY 316 Query: 311 LGDR 314 LGDR Sbjct: 317 LGDR 320 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 231 bits (590), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 123/252 (48%), Positives = 169/252 (67%), Gaps = 6/252 (2%) Query: 9 SIRLQQCAKSFANGTRA---LQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMG 65 +I L+Q K++ GT+A + +D +I GE +V++GPSGCGK+T LRM+AGLE Sbjct: 3 AIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS-S 61 Query: 66 GRVFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAERVESL 125 G++ GD V L ++R + MVFQNYAL+P+M+V +N+AYG+KI+ + +E RV+ Sbjct: 62 GQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRA 121 Query: 126 LEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLN 185 ++ L L R QLSGGQ+QRVA+ RA+ +P V L DEPL+ LDAKLR +R ++ Sbjct: 122 AAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQ 181 Query: 186 KLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADFIGA- 244 KL SL T++YVTHDQ EAM LG R++VM RG QIGTP E+Y PA FVA FIG+ Sbjct: 182 KLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSP 241 Query: 245 -MNRVHGIVSGD 255 MN + G +S D Sbjct: 242 PMNLLQGKLSAD 253 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,139,433 Number of extensions: 50597 Number of successful extensions: 619 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 346 Number of HSP's successfully gapped: 148 Length of query: 364 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 278 Effective length of database: 1,212,660 Effective search space: 337119480 Effective search space used: 337119480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)