BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0554.p
         (422 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309927|ref|YP_003774019.1| gamma-glutamyl phosphate reduct...   786   0.0  

>gi|300309927|ref|YP_003774019.1| gamma-glutamyl phosphate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/422 (96%), Positives = 418/422 (99%)

Query: 1   MENIELYMNRIGQQARAASRAMARADTAAKNQALLLIAAAIRRDAELLRAANALDLDAAR 60
           MENI+LYMNRIGQQARAASRAMARADTAAKNQALLLIAAAIRRDA+ LRAANALDL+AAR
Sbjct: 1   MENIDLYMNRIGQQARAASRAMARADTAAKNQALLLIAAAIRRDADALRAANALDLEAAR 60

Query: 61  ANGLAEAMLDRLTLSDKAIATMAEGLEQIASLPDPIGEISNMKYRPTGIQVGQMRVPLGV 120
           ANGLAEAMLDRLTLSDKAIATMAEGLEQIASLPDPIGEISNMKYRPTGIQVGQMRVPLGV
Sbjct: 61  ANGLAEAMLDRLTLSDKAIATMAEGLEQIASLPDPIGEISNMKYRPTGIQVGQMRVPLGV 120

Query: 121 IGIIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGLAGAGLPEEAVQ 180
           IGIIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGLAGAGLPE+AVQ
Sbjct: 121 IGIIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGLAGAGLPEQAVQ 180

Query: 181 VVETTDRAAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICHVYIDDRAD 240
           VVETTDRAAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICHVYIDD+AD
Sbjct: 181 VVETTDRAAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICHVYIDDKAD 240

Query: 241 TRKALDVAFNAKCHRYGTCNTMETLLVSRNIAAAILPPLSELYRVKEVELRCDAEAAEIL 300
           TRKALDVAFNAKCHRYGTCNTMETLLV+RNIAAAILPPLSELYRVKEVELRCDAEAAEIL
Sbjct: 241 TRKALDVAFNAKCHRYGTCNTMETLLVARNIAAAILPPLSELYRVKEVELRCDAEAAEIL 300

Query: 301 ADYPFLKAATDEDWDTEYLAPILAVKVVADVEEAIEHINRHSSQHTDSIVTEDYTRAMRF 360
           A YP LKAAT+EDWDTEYLAPILAVKVVAD++EAIEHINRHSSQHT+SI+TEDYTRAMRF
Sbjct: 301 AGYPLLKAATEEDWDTEYLAPILAVKVVADMDEAIEHINRHSSQHTESIITEDYTRAMRF 360

Query: 361 LREVDSASVMVNASTRFADGFEYGLGAEIGISNDKLHARGPVGLEGLTSLKYVVLGQGQV 420
           LREVDSASVMVNASTRFADGFEYGLGAEIGISNDKLHARGPVGLEGLTSLKY+VLG GQV
Sbjct: 361 LREVDSASVMVNASTRFADGFEYGLGAEIGISNDKLHARGPVGLEGLTSLKYIVLGNGQV 420

Query: 421 RQ 422
           RQ
Sbjct: 421 RQ 422


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,104,798
Number of extensions: 45826
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,203,190
Effective search space: 401865460
Effective search space used: 401865460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)