BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0552.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309925|ref|YP_003774017.1| 2-hydroxychromene-2-carboxylate...   389   e-110
gi|300313970|ref|YP_003778062.1| 2-hydroxychromene-2-carboxylate...    72   2e-14
gi|300310604|ref|YP_003774696.1| 2-hydroxychromene-2-carboxylate...    70   1e-13

>gi|300309925|ref|YP_003774017.1| 2-hydroxychromene-2-carboxylate
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  389 bits (999), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/200 (93%), Positives = 194/200 (97%)

Query: 1   MSKVCEYFFAPHSPFAYLGHDRFVALAEKYQVQILPKPFDLSKIFGVSGGLPLAKRAPQR 60
           MSKVCEYFFAPHSPFAYLGHDRFVALA+KYQVQILPKPFDLSKIFGVSGGLPLAKRAPQR
Sbjct: 1   MSKVCEYFFAPHSPFAYLGHDRFVALADKYQVQILPKPFDLSKIFGVSGGLPLAKRAPQR 60

Query: 61  QAYRLKELARWSEFLGKPMVLQPTYFPVNSDTAARLIIATQLAHGTAAALRLTGAIMRAV 120
           QAYRLKELARWSEFLGKPM+LQP +FPVNSD AARLIIATQLAHGTAAALRL GA+MRAV
Sbjct: 61  QAYRLKELARWSEFLGKPMILQPAHFPVNSDNAARLIIATQLAHGTAAALRLAGAVMRAV 120

Query: 121 WEEQRNIADTDTLVAIANALEHDGAALLKSAETASVQAEFDRFTDEANAASVFGAPWYIY 180
           WEEQ+NIAD DTLVAIAN  EHDGAALLKSAETASVQAEFDRFTDEANAASVFGAPW+IY
Sbjct: 121 WEEQKNIADPDTLVAIANVQEHDGAALLKSAETASVQAEFDRFTDEANAASVFGAPWFIY 180

Query: 181 QGEGYWGQDRLDFVERAFAK 200
           +GEGYWGQDRLDF+ERAFAK
Sbjct: 181 EGEGYWGQDRLDFLERAFAK 200


>gi|300313970|ref|YP_003778062.1| 2-hydroxychromene-2-carboxylate
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score = 72.4 bits (176), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 3/201 (1%)

Query: 1   MSKVCEYFFAPHSPFAYLGHDRFVALAEKYQVQILPKPFDLSKIFGVSGGLPLAKRAPQR 60
           MS   +++F   SP+ Y        LA ++   +   P  L  IF   G   L    P +
Sbjct: 1   MSNPIDFYFDFSSPYGYFAAVEIDKLAAQHGRDVNWHPILLGPIFKALGTNSLVN-IPVK 59

Query: 61  QAYRLKELARWSEFLGKPMVLQPTYFPVNSDTAARLIIATQLAHGTAAALRLTGAIMRAV 120
             Y   ++ R + F        P++FP+ +  AAR  +  Q     A A+ L   +  A 
Sbjct: 60  GEYSRHDMERTARF-HNIFYKAPSHFPIGTQVAARATLWVQQTQ-PAKAVELIKTLYSAY 117

Query: 121 WEEQRNIADTDTLVAIANALEHDGAALLKSAETASVQAEFDRFTDEANAASVFGAPWYIY 180
           + E  +I+  D ++ IA  L  D  AL  + E+  ++ +  + T+ A  A VFG+P+ I 
Sbjct: 118 FTEDIDISVVDNVLRIAADLGIDRNALQAALESPELKDQLRQSTEAAGQAGVFGSPFMIV 177

Query: 181 QGEGYWGQDRLDFVERAFAKG 201
            GE +WG DR   +E     G
Sbjct: 178 DGEQFWGFDRFPQLEALLKNG 198


>gi|300310604|ref|YP_003774696.1| 2-hydroxychromene-2-carboxylate
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score = 70.1 bits (170), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 7/193 (3%)

Query: 2   SKVCEYFFAPHSPFAYLGHDRFVALAEKYQVQILPKPFDLSKIFGVSG--GLPLAKRAPQ 59
           +K+ EY+F   S ++YL   R    A++  V+++ +PF L  +F   G    P   +  +
Sbjct: 5   AKLIEYWFDFGSNYSYLSTMRIEQAAQQAGVRVVWRPFLLGPVFQELGWSTSPFVLQK-E 63

Query: 60  RQAYRLKELARWSEFLGKPMVLQPTYFPVNSDTAARLIIATQLAHGTAAALRLTGAIMRA 119
           + AY  K++ R     G P  + P+ FP  +  A R+ ++ + A   ++  RL   +M  
Sbjct: 64  KGAYTWKDMTRQCRKYGLPWTM-PSRFPRAAVLATRVALSFEDALWMSSFCRL---VMHL 119

Query: 120 VWEEQRNIADTDTLVAIANALEHDGAALLKSAETASVQAEFDRFTDEANAASVFGAPWYI 179
            + E R+I   +T+  +  AL    A ++  A++   +A     T +A    +FGAP + 
Sbjct: 120 NFAEDRDIDSVETISEVLQALGLPFAEIIAEAQSEPNRARLREQTRQARTLGIFGAPTFF 179

Query: 180 YQGEGYWGQDRLD 192
              E +WG DRLD
Sbjct: 180 VGDEMFWGNDRLD 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 632,938
Number of extensions: 25036
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)