BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0549.p
         (279 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309922|ref|YP_003774014.1| hypothetical protein Hsero_0587...   509   e-145

>gi|300309922|ref|YP_003774014.1| hypothetical protein Hsero_0587
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  509 bits (1310), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/280 (90%), Positives = 265/280 (94%), Gaps = 1/280 (0%)

Query: 1   MST-SSDSLHLPSLFVSHGSPMLAVEPGRTGPLLAGIGAALPRPRGIVVMSPHWETFTPR 59
           MST ++DSL LPSLFVSHGSPMLAVEPGRTGPLLAGIGA LPRPRGIVV+SPHWETFTPR
Sbjct: 1   MSTIAADSLPLPSLFVSHGSPMLAVEPGRTGPLLAGIGATLPRPRGIVVVSPHWETFTPR 60

Query: 60  VGSQAQPRVIHDFGGFPPALYELDYPAPGAPALAEHVAQRLRDGGLPAHTDGGWGLDHGA 119
           VG+QA+PRVIHDFGGFPPALYELDYPAPGAPALAEHVAQRLRDGGLPAHTDGGWGLDHGA
Sbjct: 61  VGNQAKPRVIHDFGGFPPALYELDYPAPGAPALAEHVAQRLRDGGLPAHTDGGWGLDHGA 120

Query: 120 WVPLRYLYPQADVPVIQLSLQSQQPPAYHFQVGQLLAPLAREGILLIGSGSFTHNLRELR 179
           WVPLRYLYPQADVPVIQLSLQSQQPPAYHFQVGQLLAPLA+EGILL+GSGSFTHNLRELR
Sbjct: 121 WVPLRYLYPQADVPVIQLSLQSQQPPAYHFQVGQLLAPLAKEGILLVGSGSFTHNLRELR 180

Query: 180 RTDSAGSDAPHALEFLQWFLDRMQAGDLQALFGYRTTAPHAVRTHPSDEHLLSLFFAMGA 239
           R D+   DAPH L+FLQWFLDRMQAGD  ALFGYRTTAPHAVR HPSDEHLL+LFFAMGA
Sbjct: 181 RNDADSGDAPHTLQFLQWFLDRMQAGDRDALFGYRTTAPHAVRNHPSDEHLLTLFFAMGA 240

Query: 240 ADDWTRLVHLDSGSTYHSLRMDAFAFGTASSLLAQLPAAA 279
           ADDWT+LVHLDSGSTYHSLRMDAFAFGT S LLAQ P AA
Sbjct: 241 ADDWTQLVHLDSGSTYHSLRMDAFAFGTGSRLLAQQPVAA 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,024,641
Number of extensions: 50447
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,222,130
Effective search space: 238315350
Effective search space used: 238315350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)