BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0546.p
         (541 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309915|ref|YP_003774007.1| alkaline phosphatase D [Herbasp...  1011   0.0  

>gi|300309915|ref|YP_003774007.1| alkaline phosphatase D
           [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/542 (92%), Positives = 522/542 (96%), Gaps = 4/542 (0%)

Query: 1   MPDQNSPADHSRRRFLRDSAATAVGSAAVIASPASLA---VAPAIVTSERLRPQLPSGIM 57
           MPDQN PADHSRRRFLRDSA T V +AA +ASPA+L+    APAIVTSERLRPQLP G+M
Sbjct: 1   MPDQNPPADHSRRRFLRDSAVTTVTTAAALASPAALSATPAAPAIVTSERLRPQLPGGVM 60

Query: 58  SGDVTRDSAMVWARSDRTARILVEYSTSEHFANPIRIAGPTALARDDYSARVDLRGLPAG 117
           SGDVTRDSA++WAR+DR AR+LVEYSTS +F+NP+RIAGPTALAR+DY+ARVDLR LPAG
Sbjct: 61  SGDVTRDSAILWARADRNARMLVEYSTSGNFSNPVRIAGPTALAREDYTARVDLRDLPAG 120

Query: 118 QRVYYRVRFQDLVHESALSEPLTGSLMVPAAIQHGQVRDITFAFSGDEAGQGWGINEQWG 177
           QR+YYRVRFQDLVHESALSEPLTGSLM+PA+  HGQ RDITFAFSGDEAGQGWGINEQWG
Sbjct: 121 QRLYYRVRFQDLVHESALSEPLTGSLMMPASA-HGQARDITFAFSGDEAGQGWGINEQWG 179

Query: 178 GYRVYESMRRFRPDFFIHSGDQIYADGPIQAEVKLDDGSLWRNVVTEAKSKVAQTLDDYR 237
           GYRVYESMRRFRPDFFIHSGDQIYADGPIQAEVKLDDGSLWRNVVTEAKSKVAQTLDDYR
Sbjct: 180 GYRVYESMRRFRPDFFIHSGDQIYADGPIQAEVKLDDGSLWRNVVTEAKSKVAQTLDDYR 239

Query: 238 GNFAYNMLDANKRRFAAEVPFLVQWDDHEVRNNWYPTQVIGPQEKRYDERNIDVLAARAR 297
           GNFAYNMLDANKRRFAAEVPFLVQWDDHEVRNNWYP Q IG  EKRYDERNIDVLAARAR
Sbjct: 240 GNFAYNMLDANKRRFAAEVPFLVQWDDHEVRNNWYPGQEIGAAEKRYDERNIDVLAARAR 299

Query: 298 QAMFEHNPFRIDSADPFRIYRAFNHGPLLEVFMLDERSYRGRNSPNRQKGGHDADFLGPE 357
           QAMFEHNPFRIDSADPFRIYR+FNHGPLLEVFMLDERSYRGRNSPNRQKGGHDADFLGPE
Sbjct: 300 QAMFEHNPFRIDSADPFRIYRSFNHGPLLEVFMLDERSYRGRNSPNRQKGGHDADFLGPE 359

Query: 358 QMRWIKQALLRSRSTWKLIASDMPLSIVVPDLNPDVPKGTFEAWANADNGKPSGRELEVA 417
           QMRWIKQALLRSRSTWKLIASDMPLSIVVPDLNPDVPKGTFEAWANADNGKPSGRELEVA
Sbjct: 360 QMRWIKQALLRSRSTWKLIASDMPLSIVVPDLNPDVPKGTFEAWANADNGKPSGRELEVA 419

Query: 418 ELLRFIKQHDIKNVVWVTADVHYASATHYSPERAQFTDFKPFWEFVGGPINAGTFGPGEI 477
           ELLRFIKQHDIKNVVWVTADVHYASATHY+PERAQFTDFKPFWEFVGGPINAGTFGPGEI
Sbjct: 420 ELLRFIKQHDIKNVVWVTADVHYASATHYAPERAQFTDFKPFWEFVGGPINAGTFGPGEI 479

Query: 478 DRTFGPDVRFVSIPADMKQNRSPADLLQFFGIGKIDAKSKTLTVTLHNTDGKEIYKVELP 537
           DRTFGPDVRFVSIPADMKQNRSPA+LLQFFGIGKIDAKSKTLTVTLHNTDGKEIYKVELP
Sbjct: 480 DRTFGPDVRFVSIPADMKQNRSPAELLQFFGIGKIDAKSKTLTVTLHNTDGKEIYKVELP 539

Query: 538 PE 539
           PE
Sbjct: 540 PE 541


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,811,936
Number of extensions: 80656
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 451
Effective length of database: 1,193,720
Effective search space: 538367720
Effective search space used: 538367720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)