BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0536.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis tra... 731 0.0 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 607 e-174 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 590 e-169 gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I p... 521 e-149 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 391 e-110 >gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/518 (77%), Positives = 453/518 (87%) Query: 1 MKGWAEMRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAR 60 MK +EM+IG+KLSLGFAS LL+ LALVA A+LGINSLR +I AN ++NE+LEPLY AR Sbjct: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 Query: 61 EALDQTGIAARNAYVFLEDVDARKELKIVDEQKAIYLAELQKLEPLLADNPNFSAVRGGL 120 EALDQTGIAARNAYVF+ D DA+ EL IVDEQKAIYL +LQ LEP LAD F+AVR GL Sbjct: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLQQLQLLEPRLADRAGFAAVREGL 120 Query: 121 LQMADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVEDINQLIAEIAGQSKGAGAASE 180 LQMA+EL+ PR+YR SGAMEAYRDFLVN CSPLRRKIV +INQLI +I+ +S AG +E Sbjct: 121 LQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 Query: 181 SAAKDALHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAMAIAQQIAHGDLAVEVS 240 +AAK AL ISLLA + L+AV +AF ITR LLRQLGGEPAYAM IAQ+IAHGDLAV+V Sbjct: 181 NAAKQALLFISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 Query: 241 TRADDRSSLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQASSLE 300 TR+ D+SSLLYAI+MMRDSL+ IV QVRQGTDSIERA +EI+SGN DLS RTERQASSLE Sbjct: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 Query: 301 ETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDINQSSIKVVD 360 ETASAME+ITSAVR +A+NA QA++LA SAS IA+KGGQ+MG+VVATM+DI+ SS+K+VD Sbjct: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 Query: 421 SVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITHMDEA 480 SV KVE+GS LVKGAG TM E+V SV+ V+ VIA+IT SSREQS GIEQVNDAI+HMDE Sbjct: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 Query: 481 TQQNSALVEQAAAAAQALTSQAGSLARLVSTFKVAPTA 518 TQQNSALVEQ+AAAA+ALT+QA SLARLVSTFKVAP A Sbjct: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVAPDA 518 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 607 bits (1564), Expect = e-174, Method: Compositional matrix adjust. Identities = 319/511 (62%), Positives = 410/511 (80%) Query: 4 WAEMRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAREAL 63 + M+IG KL+LGF +L+++T+ + +++ I +L SSI+ VQ++KL PLYAAREAL Sbjct: 2 FKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREAL 61 Query: 64 DQTGIAARNAYVFLEDVDARKELKIVDEQKAIYLAELQKLEPLLADNPNFSAVRGGLLQM 123 DQTGIAARNAYVF D DA+KEL IVDEQK +YL ++ L PL A N F VR G+LQM Sbjct: 62 DQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQM 121 Query: 124 ADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVEDINQLIAEIAGQSKGAGAASESAA 183 A+EL+ PR YR+SG E YRDFLVN CSPLRR+IV DI ++A++ ++ A A++ A Sbjct: 122 AEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKMA 181 Query: 184 KDALHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAMAIAQQIAHGDLAVEVSTRA 243 + A +++L +VV ++++ +A ++TRGLL+QLGGEP YA IAQQIA GDL V T+ Sbjct: 182 QLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKT 241 Query: 244 DDRSSLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQASSLEETA 303 D SSLL+AI+ MRDSL +IV QVRQGT +IE+AS+EIASGN+DLS+RTE+QASSLEETA Sbjct: 242 GDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETA 301 Query: 304 SAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDINQSSIKVVDIIS 363 SAMEE+ + V+ NA+NA QAS+LA SAS +A +GG+++ +VV TMD IN SS K+VDIIS Sbjct: 302 SAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIIS 361 Query: 364 VIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISASVT 423 VIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI ELI+ SV+ Sbjct: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVS 421 Query: 424 KVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITHMDEATQQ 483 ++E GSSLV+ AG TME +V SV++VT V+A+I+++S+EQS GI QVN AITHMDEATQQ Sbjct: 422 QIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQ 481 Query: 484 NSALVEQAAAAAQALTSQAGSLARLVSTFKV 514 NSALVE+AAAAA ++ QAG+L+ LV+TF++ Sbjct: 482 NSALVEEAAAAANSMKEQAGALSGLVATFRL 512 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 590 bits (1520), Expect = e-169, Method: Compositional matrix adjust. Identities = 330/522 (63%), Positives = 410/522 (78%), Gaps = 1/522 (0%) Query: 1 MKGWAEMRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAR 60 M G+ M+IG KLSLGFA LL +T+ L +++ IN L SI+ A+DVQ E+L PLY AR Sbjct: 9 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 68 Query: 61 EALDQTGIAARNAYVFLEDVDARKELKIVDEQKAIYLAELQKLEPLLADNPNFSAVRGGL 120 EALDQTG+AARNAYVF + DA+KEL IVDEQK IYL L+ +EP + F VR GL Sbjct: 69 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 128 Query: 121 LQMADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVEDINQLIAEIAGQSKGAGAASE 180 LQMA+EL+ PR YR+SG ME +RDFLVN CSPLRR+IV DIN++I E + A + Sbjct: 129 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQTTV 188 Query: 181 SAAKDALHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAMAIAQQIAHGDLAVEVS 240 A A L+++L +V +++ VAF+ITR LL+QLGGEPAYA IAQQIA GDL +V Sbjct: 189 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 248 Query: 241 TRADDRSSLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQASSLE 300 + D +SLL+AI+ MRD+LAAIVG+VR+GT +IE+AS EIA+GN+DLS+RTE+QA +LE Sbjct: 249 AKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALE 308 Query: 301 ETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDINQSSIKVVD 360 ETASAMEE+ S V+ NA+NA QAS+LA SAS +A +GGQ++G+VV+TM+ IN SS K+VD Sbjct: 309 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 368 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 IISVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI +LI+ Sbjct: 369 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND 428 Query: 421 SVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITHMDEA 480 SV ++E GSSLV AG TME +V SV++VT V+A+I+ +S+EQS GI QVN AITHMDEA Sbjct: 429 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA 488 Query: 481 TQQNSALVEQAAAAAQALTSQAGSLARLVSTFKVAPTAAVPG 522 TQQNSALVE+AAAAA ++ +QA LA LVSTFK+A + A PG Sbjct: 489 TQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKLAHSPA-PG 529 >gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 521 bits (1342), Expect = e-149, Method: Compositional matrix adjust. Identities = 277/516 (53%), Positives = 386/516 (74%) Query: 1 MKGWAEMRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAR 60 M ++++IG +L LGF ++++ L L+ A++ +N++ ++++ V + KLEPLY AR Sbjct: 1 MNQLSKLKIGTQLRLGFGIVIVLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAR 60 Query: 61 EALDQTGIAARNAYVFLEDVDARKELKIVDEQKAIYLAELQKLEPLLADNPNFSAVRGGL 120 EALDQTG+AARNAY+F + +A KEL ++D+QKA+YL L++LEP+LA F + GL Sbjct: 61 EALDQTGLAARNAYIFHDQAEALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGL 120 Query: 121 LQMADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVEDINQLIAEIAGQSKGAGAASE 180 L MA+EL+ PR+YR+SG MEAY +FLV CSPLRR+IV+DI+ L+ + ++K AG ++ Sbjct: 121 LAMAEELKRPRKYRESGQMEAYGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRAD 180 Query: 181 SAAKDALHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAMAIAQQIAHGDLAVEVS 240 + +L LI A ++ +++ A++I + LL QLGGEP YA+ I +IAHG+L+ V Sbjct: 181 ALFASSLRLIMACAAIILGVSIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVD 240 Query: 241 TRADDRSSLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQASSLE 300 T DRSSLLY IR+MRD LA++V QVR GT +I AS+EIA GN +LS RTE+QA +LE Sbjct: 241 TAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLE 300 Query: 301 ETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDINQSSIKVVD 360 +T +AM+E+T AVR NA+NA QA LA SAS +A + G ++ +VV TM I+ SS K+VD Sbjct: 301 KTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 II VIDGIAFQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA+AA+EIK LI + Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLIDS 420 Query: 421 SVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITHMDEA 480 SV+ V GS LV+ AG TM+++V SV++V+ V+ +I+ +S+ QS GI +VN AI +DE Sbjct: 421 SVSSVTDGSRLVEQAGATMQDVVESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDEN 480 Query: 481 TQQNSALVEQAAAAAQALTSQAGSLARLVSTFKVAP 516 TQQN+ALVE+AAAA+Q+++ QA L +LV FK++P Sbjct: 481 TQQNAALVEEAAAASQSMSQQADHLNQLVGAFKLSP 516 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 391 bits (1004), Expect = e-110, Method: Compositional matrix adjust. Identities = 254/518 (49%), Positives = 346/518 (66%), Gaps = 12/518 (2%) Query: 7 MRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAREALDQT 66 M++G +L LGFA ++L+ + + I ++ ++ +V+N + + E + + Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 Query: 67 GIAARNAYVFL--EDVDARKELKIVDEQKAIYLAELQKLEPLLADNPNFSAVRGGLL--- 121 I+ RN + EDVD E + ++ Q Y QKL+ L A++ + S L Sbjct: 65 SISLRNLMLPAAPEDVDI--EAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKI 122 Query: 122 --QMADELRLPRQYRQSGAM-EAYR--DFLVNRCSPLRRKIVEDINQLIAEIAGQSKGAG 176 Q + +L + + G EAY FL + P+++ ++ L A +K A Sbjct: 123 AAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAA 182 Query: 177 AASESAAKDALHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAMAIAQQIAHGDLA 236 AS A A L+ L++ + + AV AF +TR LLR+LGGEP YA+ IA QIA GDLA Sbjct: 183 EASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLA 242 Query: 237 VEVSTRADDRSSLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQA 296 V + TRA D SL+ A+R+MRD LAAIV +VR+G+++I AS+EIA GN+DLS RTE+QA Sbjct: 243 VVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQA 302 Query: 297 SSLEETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDINQSSI 356 +LEETAS+ME++ S V+ NAENA QA++LA +AS +AV+GG ++ +VV TM IN SS Sbjct: 303 GALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQ 362 Query: 357 KVVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKE 416 KV DI+SVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA+AAKEIK Sbjct: 363 KVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKV 422 Query: 417 LISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITH 476 LI SV KVE GS LV+ AG TM +IV S+R+VT V+ +I ++REQS+GIEQVN+AI Sbjct: 423 LIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQ 482 Query: 477 MDEATQQNSALVEQAAAAAQALTSQAGSLARLVSTFKV 514 +D+ TQQN+ALVEQAAAAA++L QA L +LVS F++ Sbjct: 483 IDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRL 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.127 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,008,969 Number of extensions: 31835 Number of successful extensions: 443 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 272 Number of HSP's successfully gapped: 71 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)