BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0520.p
         (581 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309875|ref|YP_003773967.1| anion ABC transporter permease ...  1122   0.0  
gi|300311840|ref|YP_003775932.1| nitrate/sulfonate/bicarbonate A...    59   1e-09

>gi|300309875|ref|YP_003773967.1| anion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 581

 Score = 1122 bits (2903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/581 (95%), Positives = 569/581 (97%)

Query: 1   MKTTSPQLTAYEEVKPGFGWIDALVLAVLFGLLWSALHFGKGMLVHFDPSDQLEVDSSPA 60
           MKTTSPQLTAYEEVKPGFGWIDALVLAVLFGLLWSALHFGKGMLVHFDPSDQLEVDSSPA
Sbjct: 1   MKTTSPQLTAYEEVKPGFGWIDALVLAVLFGLLWSALHFGKGMLVHFDPSDQLEVDSSPA 60

Query: 61  MIPYYAGRTLLRMWIAFAFSLFFAIGTGYLAAKNRRARALILPALDILQSVPVLGFLSAT 120
           MIPYYAGRTLLRMWIAFAFSLFFAIGTGYLAAK+RRARALILPALDILQSVPVLGFLSAT
Sbjct: 61  MIPYYAGRTLLRMWIAFAFSLFFAIGTGYLAAKSRRARALILPALDILQSVPVLGFLSAT 120

Query: 121 VTGFMALFPGSLMGVECAAIFAIFTGQVWNMAFGFYHSMVTIPTDMQEAATTYRLTAWQR 180
           V GFMALFPGSLMGVECAAIFAIFTGQVWNMAFGFYHSMVTIPTDMQEAATTYRLTAWQR
Sbjct: 121 VAGFMALFPGSLMGVECAAIFAIFTGQVWNMAFGFYHSMVTIPTDMQEAATTYRLTAWQR 180

Query: 181 FRTVELPASAHSLIWNSMMSFGGGWFFVAQSEAISVMNKDLKLPGLGSYMAQAIDKGDHT 240
           FRTVELPASAHSLIWNSMMSFGGGWFFVAQSEAISVMNKDLKLPGLGSYMAQAID+GDHT
Sbjct: 181 FRTVELPASAHSLIWNSMMSFGGGWFFVAQSEAISVMNKDLKLPGLGSYMAQAIDQGDHT 240

Query: 241 AALWAVIAMLALILISDQLVWRPLLAWADKFKIELTESTSPPTSWVYDLLRGSYVFTWLD 300
           AALWAVIAMLALIL+SDQLVWRPLLAWADKFKIELTES+SPPTSWVYDLLRGSYVFTWLD
Sbjct: 241 AALWAVIAMLALILVSDQLVWRPLLAWADKFKIELTESSSPPTSWVYDLLRGSYVFTWLD 300

Query: 301 EKLWTPLGNWLARHRPATAGNLTPARVARRRWTNRLISGLIFGLLIFESLRGLVAAIDAL 360
           EK W PLG+WLARHRP T+   TPAR+ R RWT R+++GLI GLLIFE+LRGLVAAIDAL
Sbjct: 301 EKCWQPLGDWLARHRPGTSAAPTPARITRERWTKRVLTGLICGLLIFEALRGLVAAIDAL 360

Query: 361 HGAMSWSLFGHIVWLGFLTLLRVLAMTVIATLIWTPVGVWIGSKPHIARFAQPLAQIGAS 420
           HGAMSWSLFGHIVWLGFLT+LRVLAMTVIATLIWTPVGVWIGSKPHIARFAQPLAQIGAS
Sbjct: 361 HGAMSWSLFGHIVWLGFLTMLRVLAMTVIATLIWTPVGVWIGSKPHIARFAQPLAQIGAS 420

Query: 421 FPVNMTFPLVVGWFVAGNVSMNWGSILLIAMGTQWYILFNVIAGAMAIPNDLKEAARMYG 480
           FPVNMTFPLVVGWFVA NVSMNWGSILLIAMGTQWYILFNVIAGAMAIPNDLKEAARMYG
Sbjct: 421 FPVNMTFPLVVGWFVAANVSMNWGSILLIAMGTQWYILFNVIAGAMAIPNDLKEAARMYG 480

Query: 481 LSRWNLWKTLILPAIFPFWVTGACTAAGGAWNASIVAELANWGDVSLKADGLGAYISAVT 540
           LSRWNLWKTLILPAIFPFWVTGACTAAGGAWNASIVAELA+WGDVSLKADGLGAYISAVT
Sbjct: 481 LSRWNLWKTLILPAIFPFWVTGACTAAGGAWNASIVAELASWGDVSLKADGLGAYISAVT 540

Query: 541 KSGDTPLIIASIGVMSMFVVMMNKFVWRRLYAFAERRFRLD 581
           KSGDTPLIIASIGVMSMFVV+MNKFVWRRLYAFAERRFRLD
Sbjct: 541 KSGDTPLIIASIGVMSMFVVLMNKFVWRRLYAFAERRFRLD 581


>gi|300311840|ref|YP_003775932.1| nitrate/sulfonate/bicarbonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 412 QPLAQIGASFPVNMTFPLVVGWFVAGNVSMNWGSILLIAMGTQWYILFNVIAGAMAIPND 471
           + L  +    P     PL + WF  G  S+    I ++     W +  N   G  A+ N 
Sbjct: 125 ETLTSMFNPLPAIALLPLALIWFGLGTGSI----IFVLVHSVLWAVALNTHGGFRAVSNT 180

Query: 472 LKEAARMYGLSRWNLWKTLILPAIFPFWVTGACTAAGGAWNASIVAELANWGDVSLKADG 531
           L+   + YGL R++L K++++PA FP  +TG       AW   I AEL     VS  A G
Sbjct: 181 LRMVGQNYGLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVF--GVSSGAGG 238

Query: 532 LGAYISAVTKSGDTPLIIASIGVMSMFVVMMNKFVWRRLYAFAERR 577
           LG YI       +T  + + +     FV+++   V   ++A  E+R
Sbjct: 239 LGWYIFENRNQLETANVFSGL----FFVIIIGLVVENLIFAQIEKR 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,973,801
Number of extensions: 85008
Number of successful extensions: 437
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 8
Length of query: 581
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 491
Effective length of database: 1,193,720
Effective search space: 586116520
Effective search space used: 586116520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)