BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0518.p (547 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 875 0.0 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 478 e-136 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 406 e-114 gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 359 e-100 gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sen... 358 e-100 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/548 (82%), Positives = 497/548 (90%), Gaps = 2/548 (0%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNAL 60 MG LKVVTRLALGFGLILVFLL ISALG YGM+RVNDALTDIT VNNAEIKL +ALRNAL Sbjct: 1 MGNLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNAL 60 Query: 61 SQRAIAIRNIALLEDEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQ 120 SQRA+AIRNIALL+++A MQVE+QTLARQEKLYADAY AL+KMF TEA TTERE +LL Q Sbjct: 61 SQRALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQ 120 Query: 121 VKADENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDEA 180 +K DE AT+PLMAKA+QLGLENK AEA K+LI++VRPKQQAWI SLTEL+EFEDQLNDEA Sbjct: 121 IKNDEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEA 180 Query: 181 AVSARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGDL 240 A SAR+TY WLR + + + ALLVG+ A+ IARSILRQLGAEPSEAQ++AR+IASGDL Sbjct: 181 ATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDL 240 Query: 241 TATVRVRVGDGSSLMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 TATVRVR GD SSLMASIEQMRYQLNVIA+GIKSAAETISVASGQIAQGNFDLSQRTEEQ Sbjct: 241 TATVRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 Query: 301 AASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISASS 360 AASLEETAASMEELTTTVRQNT+HA+EALRLSGGA +TA +GS AFDRVV TMD+I+ASS Sbjct: 301 AASLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASS 360 Query: 361 GKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIK 420 KM+DIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVA+KEIK Sbjct: 361 SKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIK 420 Query: 421 DLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTAIV 480 +LIGESMSHV AGS+LV++AG QM++IVASVQRFGEIMNNIATATQEQGSGIEQINTA+V Sbjct: 421 ELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMV 480 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRTDASTMAAASNNANVGALQG 540 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIR D S +AA A + G Sbjct: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDRS-LAAPLEQAALTRTPG 539 Query: 541 AP-MPALQ 547 P MPAL Sbjct: 540 MPGMPALH 547 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 478 bits (1230), Expect = e-136, Method: Compositional matrix adjust. Identities = 271/519 (52%), Positives = 365/519 (70%), Gaps = 2/519 (0%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNAL 60 M KLKV TRLALGF ++V L+ IS +G +GM+ V L+DI NN + LA + N++ Sbjct: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIV-ANNQQGGLADVMNNSV 59 Query: 61 SQRAIAIRNIALLEDEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQ 120 RA+AIRNIAL ++ A + E + + QEK Y DA L KMF + TT REH+L Sbjct: 60 RIRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMF-DQPDTTRREHELFDL 118 Query: 121 VKADENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDEA 180 + + T PLM +A+ L ++K AE + +L ++RP Q W+ +L EL FED+LN++A Sbjct: 119 IAQNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQA 178 Query: 181 AVSARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGDL 240 + +A +TY + T T +A ++L+ + AA I RS+L QLG EP++AQ +A +IA G+L Sbjct: 179 SAAADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNL 238 Query: 241 TATVRVRVGDGSSLMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 ++ + GD SLMAS+E MR QL I GIK +AE+IS A+ QIA GN DLS+RTEEQ Sbjct: 239 AVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQ 298 Query: 301 AASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISASS 360 AASLEETA+SMEE+T+TV QNT++A + +L+ A+ A G +RVV TM IS S+ Sbjct: 299 AASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSA 358 Query: 361 GKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIK 420 K+ +II+ +EGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA ++KEI+ Sbjct: 359 YKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIR 418 Query: 421 DLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTAIV 480 LI S+ HV AG +LV AG M E+V S+Q+ ++M+ I A+ EQ SGI QIN AI Sbjct: 419 GLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAIS 478 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 QMD+VTQQNAALVEE+++AAQS++QQA+ L V+VF+I Sbjct: 479 QMDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRI 517 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust. Identities = 239/516 (46%), Positives = 339/516 (65%) Query: 4 LKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNALSQR 63 +K+ TRL LGF +++ L+ ++ G + M +V T + V N E L + + +R Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 Query: 64 AIAIRNIALLEDEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQVKA 123 +I++RN+ L + +EAQ + Q Y A L+++FA + T++ E L ++ A Sbjct: 65 SISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKIAA 124 Query: 124 DENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDEAAVS 183 + L+ +A++ G + E + L + P Q++W L L+ EDQLN EAA + Sbjct: 125 QASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAAEA 184 Query: 184 ARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGDLTAT 243 + Y R LML A+ ++ ++AA + R +LR+LG EP A IA +IA GDL Sbjct: 185 SAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVV 244 Query: 244 VRVRVGDGSSLMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTEEQAAS 303 + R GD SLMA++ MR +L I ++ +ETI+ AS +IA+GN DLS RTE+QA + Sbjct: 245 IDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGA 304 Query: 304 LEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISASSGKM 363 LEETA+SME+L +TV+QN E+A +A L+ A+ A G + +VV TM I+ASS K+ Sbjct: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKV 364 Query: 364 ADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIKDLI 423 ADI+SVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA A+KEIK LI Sbjct: 365 ADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLI 424 Query: 424 GESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTAIVQMD 483 G+S+ V GS+LV AG M +IV S++R ++M I A +EQ SGIEQ+N AI+Q+D Sbjct: 425 GDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQID 484 Query: 484 QVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 +TQQNAALVE+A+AAA+SL +QA+GL ++VSVF++ Sbjct: 485 DMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRL 520 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust. Identities = 224/525 (42%), Positives = 326/525 (62%), Gaps = 6/525 (1%) Query: 4 LKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNALSQR 63 L V TRLAL F L+L +L ++ + ++ +ND+LT ++ NN + + A R ++ R Sbjct: 11 LSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGSVHDR 70 Query: 64 AIAIRNIALLEDEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQVKA 123 AIA+R++ L+ D V A +++ + Y + L++MFA E E L +KA Sbjct: 71 AIALRDLTLVGDTELKDVSA-LISKLDADYQRSAKLLDEMFAGMQVRPE-ERASLDSIKA 128 Query: 124 DENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDEAAVS 183 E +PL AK + A ++++S+ +P W+ ++ + E+ ++ + Sbjct: 129 VEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEESMSQAESAK 188 Query: 184 ARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGDLTAT 243 AR+ + ML +A AL+ G V A+ I RSI LGAEP E + +A + G+L Sbjct: 189 ARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAVDRGELYHA 248 Query: 244 VRVRVGDGS---SLMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 + + + S+MA++ +M L ++ AA+ ++ S QIA GN DL+ RTE+Q Sbjct: 249 AALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRDLAARTEDQ 308 Query: 301 AASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISASS 360 AASLEETA++ME+LT TV+QN HA +A +L+ A++ A G A D VV TM I+ SS Sbjct: 309 AASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMAAINVSS 368 Query: 361 GKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIK 420 K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA A+KE+K Sbjct: 369 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEVK 428 Query: 421 DLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTAIV 480 LI +S+ +V G+ LV AG M +IVASVQ+ ++M I++A+ EQ GIE+++ AI Sbjct: 429 QLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGIEEVHKAIA 488 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI-RTDAS 524 MDQVTQ NAALVE+ASAA +L +QA L + V VF++ R D S Sbjct: 489 LMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLERPDQS 533 >gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust. Identities = 241/517 (46%), Positives = 323/517 (62%) Query: 3 KLKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNALSQ 62 +L V +RL GFG++L +L I + ++ VN L IT VNN EI S +R A + Sbjct: 5 RLTVSSRLKFGFGVVLFLILLIVGIALKKLAEVNRQLVSITEVNNVEIYHLSTMRAAAYE 64 Query: 63 RAIAIRNIALLEDEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQVK 122 +++A R I L + A L RQ LY + AL K+FA TT+ E + LA ++ Sbjct: 65 QSLASRGIGLALTPEDLNQNANNLQRQIGLYTQSEAALAKLFADLQETTDTEKQALAAIQ 124 Query: 123 ADENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDEAAV 182 P ++ + L K E ++ + Q +L ELS FED+LN+EA Sbjct: 125 KMSAGLSPGLSNMIDLAKAQKTEELKPIMTGPLGKMQADRRKALAELSAFEDKLNNEAKD 184 Query: 183 SARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGDLTA 242 A + R L++ +ALL G++AAV I RS+LRQLG EP+ A +A +IA GDL Sbjct: 185 EALAVSASARKLLIALGVIALLCGLMAAVLITRSVLRQLGGEPAYASRLAAQIAKGDLRT 244 Query: 243 TVRVRVGDGSSLMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTEEQAA 302 V+ SLM S++ M L I ++S + I+ AS QIA GN DLS RTEEQA+ Sbjct: 245 EVKADTRHPESLMMSMKTMNEGLRGIVREVRSGTDAIATASSQIASGNLDLSSRTEEQAS 304 Query: 303 SLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISASSGK 362 SLEETA++ME+LT TV+QN + A EA RL+ A+ A+ VV+TM I SS K Sbjct: 305 SLEETASAMEQLTATVKQNADSAGEANRLAAEASAVASQSGQLVKEVVTTMAAIEDSSKK 364 Query: 363 MADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIKDL 422 + DIISVI+GI+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+ A++EIK L Sbjct: 365 IVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSSAAAREIKAL 424 Query: 423 IGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTAIVQM 482 I +S+ V++GS LV AG MS++V+SV R ++ I+ ++ EQ GI++IN AI QM Sbjct: 425 IDDSVDKVASGSALVNRAGDTMSDVVSSVDRVVSVIGAISDSSAEQSKGIQEINHAISQM 484 Query: 483 DQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 DQVTQQNAALVEEA+AA+Q+L QA L VV VF + Sbjct: 485 DQVTQQNAALVEEAAAASQALQAQARRLSGVVEVFAV 521 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,045,619 Number of extensions: 31153 Number of successful extensions: 439 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 71 Length of query: 547 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 457 Effective length of database: 1,193,720 Effective search space: 545530040 Effective search space used: 545530040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)