BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0506.p
         (337 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309858|ref|YP_003773950.1| Na+-dependent transporter prote...   478   e-136
gi|300312029|ref|YP_003776121.1| Na+-dependent transporter prote...   345   3e-96

>gi|300309858|ref|YP_003773950.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  478 bits (1230), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/305 (88%), Positives = 286/305 (93%)

Query: 33  MHIASNAAISLLFFLHGAKLSREAALSGLKQPRLHLLTLGSTFLLFPLLGLALKSLVPDL 92
           MH+ASN AISLLFFLHGAKLSREAAL+GLKQPRLHLLTLGSTFLLFPLLGL LK++ PDL
Sbjct: 1   MHVASNVAISLLFFLHGAKLSREAALAGLKQPRLHLLTLGSTFLLFPLLGLGLKAVAPDL 60

Query: 93  LTPQLWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGIVITPLLVTLLLH 152
           LTPQLWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGI++TPLLVTLLLH
Sbjct: 61  LTPQLWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGILVTPLLVTLLLH 120

Query: 153 RHHQADGFSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFS 212
           RHH+A+G SQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFS
Sbjct: 121 RHHEANGLSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFS 180

Query: 213 VAVAQGVWHLFPPGQLALLVLVNAVLLGTVLLVTTYGARALKMPRGDEIVLVFCGSKKSL 272
            AVAQG+WHLFPPGQLALLVLVNA+LLG VLL+TTYGARALKMPRGDEIVLVFCGSKKSL
Sbjct: 181 AAVAQGIWHLFPPGQLALLVLVNAMLLGAVLLITTYGARALKMPRGDEIVLVFCGSKKSL 240

Query: 273 ASGIPIAAVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAARHEDGHDDEAIGQERVP 332
           ASGIPIA+VLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAA+ +    D+A  Q    
Sbjct: 241 ASGIPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAAQQDHLDADDASSQRAAT 300

Query: 333 MPAAR 337
           +  +R
Sbjct: 301 LAGSR 305


>gi|300312029|ref|YP_003776121.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  345 bits (885), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 177/319 (55%), Positives = 223/319 (69%), Gaps = 2/319 (0%)

Query: 3   RFLPDRFTQLLISTVLLATFFPATGSFEHFMHIASNAAISLLFFLHGAKLSREAALSGLK 62
           RFLPD  T LL++ V+ A+  P TG         +   I LLFF+HGAKLSREA ++G  
Sbjct: 5   RFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVVAGFT 64

Query: 63  QPRLHLLTLGSTFLLFPLLGLALKSLVPDLLTPQLWMGVLFVCTLSSTVQSSIGFTSIAR 122
             +LH+  L  TF LFPL+GLA K L+   +TP+L++G+LF+C L STVQSSI FTS+AR
Sbjct: 65  HWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFTSVAR 124

Query: 123 GNVPAAICGATASNLLGIVITPLLVTLLLHRHHQA--DGFSQVLSILLQLLLPFVLGNLL 180
           GNVPAAIC A+ASNLLGI +TPLLV  L+  H  A       +L I+ QLLLPFV G + 
Sbjct: 125 GNVPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVAGQIA 184

Query: 181 RPWIGDWINRHKVIVNVVDRGGILLSVYAAFSVAVAQGVWHLFPPGQLALLVLVNAVLLG 240
           RPWIG WI R+K  +  VD+  ILL VY AFS AV QG+WH  P   L  L+++NAVLL 
Sbjct: 185 RPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINAVLLA 244

Query: 241 TVLLVTTYGARALKMPRGDEIVLVFCGSKKSLASGIPIAAVLFAGSGAAVVLLPIMLFHQ 300
            ++ +TTYG+R L   + DEI +VFCGSKKSLASG+P+A VLF+     +VLLP+MLFHQ
Sbjct: 245 LIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQ 304

Query: 301 MQLMLCAVLARRYAARHED 319
           +QLM+CAVLA RY AR E+
Sbjct: 305 LQLMVCAVLAARYGARQEE 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 836,298
Number of extensions: 27216
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,212,660
Effective search space: 304377660
Effective search space used: 304377660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)