BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0499.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309851|ref|YP_003773943.1| pyrophosphatase [Herbaspirillum...   210   3e-56

>gi|300309851|ref|YP_003773943.1| pyrophosphatase [Herbaspirillum
           seropedicae SmR1]
          Length = 137

 Score =  210 bits (535), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 109/130 (83%)

Query: 11  SSAPTSDLHQLRDIIHRFSSERDWLRFHTPKNLVMALSVEVAELMEHFQWLPTGADHELD 70
           S+AP SDLH+LR +I +F SERDWLRFHTPKNL MALSVEVAEL+EHFQWLPTGADHELD
Sbjct: 6   SAAPISDLHELRVMIRQFCSERDWLRFHTPKNLAMALSVEVAELLEHFQWLPTGADHELD 65

Query: 71  DAARQGIRHEMADVLVYLIQLADHIGVDLHEAVLEKMELNGRKYPVELARGNARKYSDLA 130
           DAAR+GIRHEMADVLVYLIQLADH GVDL  AVLEKM+LN RKYPVELAR  A KY+ L 
Sbjct: 66  DAAREGIRHEMADVLVYLIQLADHTGVDLRSAVLEKMQLNARKYPVELARCKADKYTTLG 125

Query: 131 PAPRPDAQQG 140
            A    A  G
Sbjct: 126 AASATSASGG 135


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 472,152
Number of extensions: 17800
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)