BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0497.p (550 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 926 0.0 gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 591 e-170 gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 362 e-101 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 305 9e-84 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 295 5e-81 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/557 (86%), Positives = 512/557 (91%), Gaps = 10/557 (1%) Query: 1 MRTNLPITTIERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFEEVELIGAPQNIVRHPE 60 MR NLPITT ERLLEDGKSIVSKTDLQGNI YVNPYF+EISGFEE ELIGAPQNIVRHPE Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 121 EQVQAAENAYRRFVAGQARGLRIHRGAVASTGIMGWLQGLRDLSMAKRLAWMMSILTLLV 180 EQVQAAE AYR+F AGQARGLR+HRGAV TG+ GWLQGLR+L +A+RL W M +LTL+ Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 181 ITGGLAAGSAVQSAGGSPYAIWLGTLAGTLLLLGSWAILHASIVAPLQRAIKAVHGLAGG 240 I GG AG+AV SAGGSP+A+WLGT AG L+LL SWA+LHASIVAPLQRAIKAVHGLAGG Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG 240 Query: 241 DLDLHIDTTAHGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRT 300 DLD HIDTTA GDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIA+GNMDLS RT Sbjct: 241 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT 300 Query: 301 ESQASALEETASSVEQFAATVRQNADSASNADRQAQTASAIAQRGSASVQRMGKTMDEID 360 E+QASALEETASSVE+FAATVRQNADSA+NADRQAQ+ASAIAQRG +SVQRMG+TM+EID Sbjct: 301 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEID 360 Query: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAK 420 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVA+EVRTLAQRSAAAAK Sbjct: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK 420 Query: 421 DIKSLIDDSRAKVESGNLLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 DIK LIDDSRAKVESGN LVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ Sbjct: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 Query: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAVSVFRITY-----VSAGPTTTAAS 535 AVNAIDETTQQNAALVEQAAAAAENLRDQ++KLSQAVSVF+I+Y + P T+ A Sbjct: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKISYAVSRAANVAPDTSVAL 540 Query: 536 APALR--RKEGTLALAR 550 PA + RK LALAR Sbjct: 541 PPASQGPRK---LALAR 554 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 591 bits (1524), Expect = e-170, Method: Compositional matrix adjust. Identities = 304/527 (57%), Positives = 389/527 (73%), Gaps = 15/527 (2%) Query: 1 MRTNLPITTIERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFEEVELIGAPQNIVRHPE 60 MR N+P+T ERLL DGK+IVSKTDL+GNITYVNPYF+EISGFEE EL+GAPQN++RHP+ Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MP EAFADMWAT+K G PW GLVKNR KNGD+YWV+ANVTP+RENG+ VGYMSVRT+P R Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 EQVQAAENAYRRFVAGQARGLRIHRGAVASTGIMGWLQGLRDLSMAKRLAWMMSIL---T 177 + V AE Y GQA+G+ +HRG V TG+ GWL L + + RL M I+ Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQ 180 Query: 178 LLVITGGLAAGSAVQSAGGSPYAIWLGTLAGTLLL--LGSWAILHASIVAPLQRAIKAVH 235 L V+ G+AA + W+ LA L + W L +++ PL +A+ H Sbjct: 181 LAVVVAGMAA----------LHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITH 230 Query: 236 GLAGGDLDLHIDTTAHGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMD 295 + GGDL + I+TT H ++G LL++L+Q+NVNL AIIGDVR NVE++T++T EIASGN+D Sbjct: 231 AITGGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLD 290 Query: 296 LSSRTESQASALEETASSVEQFAATVRQNADSASNADRQAQTASAIAQRGSASVQRMGKT 355 LS RTE+QA+ LEETASS+ + A+TVRQNAD A A+ A TASAIA RG +V G T Sbjct: 291 LSRRTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTT 350 Query: 356 MDEIDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 415 M+EI +SHKIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS Sbjct: 351 MNEISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 410 Query: 416 AAAAKDIKSLIDDSRAKVESGNLLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGI 475 AAAAK+IK LID S KV+ GN V + M ++ +V+ ++ M EI A+ +QS GI Sbjct: 411 AAAAKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGI 470 Query: 476 EQLNQAVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAVSVFRI 522 Q+++A+ +D +TQQNA+LVE+AAAAA +L++Q+++L QA+SVF+ Sbjct: 471 NQVHEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKF 517 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/506 (44%), Positives = 316/506 (62%), Gaps = 22/506 (4%) Query: 21 VSKTDLQGNITYVNPYFVEISGFEEVELIGAPQNIVRHPEMPREAFADMWATLKEGLPWN 80 +S TD +TY N FVE+SGF +LIG P NIVRHP+MPREAFADMWATL+ G W Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 81 GLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSREQVQAAENAYRRFVAGQARG 140 +VKNR +G +YWV+ANVTP+R G G++SVRT+P+ +++AA YRRF G+ARG Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 141 LRIHRGAVASTGIMGWLQGLRDLSMAKRLAWMMSILTLLVITGGLAAGSAVQSAGGSPYA 200 LR G V +G++GW + + L + RL ++ L + GG+ AG+ P A Sbjct: 121 LRFCHGLVVRSGLLGWTRLEQVLPVRWRLRLALAAGGLTALAGGILAGA--------PLA 172 Query: 201 IWLGTLAGTLLLLGSWAILHASIVAPLQRAIKAVHGLAGGD------LDLHIDTTAHGDM 254 ++ L L W L + APL+ ++ +A G LD ID ++ Sbjct: 173 PMAASVLPPLALACLW--LERRLAAPLELVLQQAKAVACGQPAQTQGLD-RID-----EI 224 Query: 255 GLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSV 314 GLLL+A+ Q +NLRA+I DV V+ + ++ +IAS N DL RT + L++TAS+ Sbjct: 225 GLLLRAVNQSGLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAA 284 Query: 315 EQFAATVRQNADSASNADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVDIIGLID 374 EQ A VR +ADSA A QA+ S A +G V ++ +TM +I AS +I +I GLID Sbjct: 285 EQMATAVRHSADSAQAAHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLID 344 Query: 375 GISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDDSRAKVE 434 I+FQTNILALNAAVEAARAGE GRGFAVVA+EVRTLAQRSA+AA++IK+LI S + + Sbjct: 345 SIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQ 404 Query: 435 SGNLLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAA 494 +G + A A+ + ++M+ + I+ ++ EQS G+ Q++Q+ +D TQQNAA Sbjct: 405 AGAQRAEQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAA 464 Query: 495 LVEQAAAAAENLRDQSIKLSQAVSVF 520 +VE +AAA ++ + L QAV+VF Sbjct: 465 MVEHSAAAVAAMQQRMQTLQQAVAVF 490 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 305 bits (780), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 178/326 (54%), Positives = 245/326 (75%), Gaps = 6/326 (1%) Query: 211 LLLGSWAILHASIVAPLQRAIKAVHGLAGGDLDLHIDTTAHGDMGLLLQALQQLNVNLRA 270 ++LG ++ SIV PL A++ +A GDL I+ + + G L+QAL+++N NL Sbjct: 207 IILGY--LMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIE 264 Query: 271 IIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVEQFAATVRQNADSASN 330 I+ VRR ES+T ++GEIASGN+DLS+RTE QA +LEETAS++E+ +TVRQNAD+A Sbjct: 265 IVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQ 324 Query: 331 ADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVDIIGLIDGISFQTNILALNAAVE 390 A++ A +AS IA +G V R+ TMDEI+ +S KIVDIIG+IDGI+FQTNILALNAAVE Sbjct: 325 ANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVE 384 Query: 391 AARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDDSRAKVESGNLLVRETAQAMGEL 450 AARAGEQGRGFAVVA+EVR+LAQRSAAAAK+IK+LI DS KVE G+ LV + M ++ Sbjct: 385 AARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQV 444 Query: 451 GGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAAAAAENLRDQS 510 +V ++ +AEI+ AS EQS GIE++N+AV +DE TQQNAALVEQAAAAA+++++Q+ Sbjct: 445 VSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQA 504 Query: 511 IKLSQAVSVFRI----TYVSAGPTTT 532 ++L+Q++S+F++ + A P T Sbjct: 505 VRLTQSISIFKLEQGAASIPAAPVRT 530 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 295 bits (756), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 183/335 (54%), Positives = 240/335 (71%), Gaps = 4/335 (1%) Query: 204 GTLAGTLLLLGSWAILHASIVAPLQRAIKAVHGLAGGDLDLHIDTTAHGDMGLLLQALQQ 263 G +A L +L +W + + +I PL A++ +A GDL I+ + + G LL AL+ Sbjct: 199 GAIALMLAVLLAWWLAN-NITRPLALAVQLARRVASGDLTARIEVRSRDETGALLGALKD 257 Query: 264 LNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVEQFAATVRQ 323 +N +L I+ VRR E + ++ EIA+GN+DLSSRTE QAS+LEETASS+E+ +TV+Q Sbjct: 258 MNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQ 317 Query: 324 NADSASNADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVDIIGLIDGISFQTNIL 383 N +A A+R AQ AS IA G V R+ TM+EI+ +S KIVDII +IDGI+FQTNIL Sbjct: 318 NTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNIL 377 Query: 384 ALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDDSRAKVESGNLLVRET 443 ALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAK+IK+LI DS AKVESG+LLV E Sbjct: 378 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSLLVNEA 437 Query: 444 AQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAAAAA 503 M E+ +V+ + + EI+ A EQ GIEQ++QAV +D+ TQQNAALVEQAAAA+ Sbjct: 438 GDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAAS 497 Query: 504 ENLRDQSIKLSQAVSVFRITYVSAGPTTTAASAPA 538 ++L++Q+ +L+QAVSVFR+ AG A PA Sbjct: 498 QSLQEQAQELAQAVSVFRL---EAGQALEVAPEPA 529 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,287,041 Number of extensions: 45514 Number of successful extensions: 525 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 70 Length of query: 550 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 460 Effective length of database: 1,193,720 Effective search space: 549111200 Effective search space used: 549111200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)