BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0496.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309844|ref|YP_003773936.1| glutamine amidotransferase [Her...   294   4e-81
gi|300309390|ref|YP_003773482.1| glutamine amidotransferase [Her...   177   6e-46

>gi|300309844|ref|YP_003773936.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score =  294 bits (753), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 149/227 (65%), Positives = 172/227 (75%)

Query: 1   MKTAIAIRHVHFEDLGILHEVLREQAYALTYLDACIDDLDTPLVQQADLLIVLGGPIGAY 60
           MK AIA+RHVHFED+GIL  +L    Y L Y+DA I+  DT   +QADLLIVLGGPIGAY
Sbjct: 1   MKEAIALRHVHFEDVGILDSLLASHGYRLRYIDATIEQADTAAAEQADLLIVLGGPIGAY 60

Query: 61  DDARYPFLASELAAITRRLMRGAPTLGICLGAQLMARALGADVAPMGVKEIGYAPLSLTE 120
           D+  +PFL  EL  I RRL +  P LGICLGAQL+ARALGA+VAPMG+KEIGYAPL L+ 
Sbjct: 61  DEGLHPFLLRELDLIARRLQQQRPLLGICLGAQLIARALGAEVAPMGLKEIGYAPLDLST 120

Query: 121 AGRHSPLAALEDVPVLHWHGDRFEIPAQATHLAGSALCAQQAFAVGRQVLALQFHLEADP 180
            GR SPLAALE  PVLHWHGD+F IP  AT LA + +C  QAF++G  VLALQFHLEADP
Sbjct: 121 EGRLSPLAALEGQPVLHWHGDQFAIPPGATCLASTPVCPHQAFSLGAHVLALQFHLEADP 180

Query: 181 KRIEQWLVGHACELDHAGIDPRHLRDAAQRLGGTLQQAARHVVTQWL 227
            RI QWLVGHACEL  AGIDPR LR+ A+R G  L+ AA  V++ WL
Sbjct: 181 ARINQWLVGHACELGQAGIDPRSLREQAKRFGTDLRSAAHAVMSNWL 227


>gi|300309390|ref|YP_003773482.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score =  177 bits (449), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 112/237 (47%), Positives = 139/237 (58%), Gaps = 11/237 (4%)

Query: 2   KTAIAIRHVHFEDLGILHEVLREQAYALTYLDACIDDLDTPLVQQADLLIVLGGPIGAYD 61
           KTA+A+RHV  EDLG L  +L    Y + + D  +D  D      ADLLIVLGGPI  YD
Sbjct: 3   KTALALRHVVSEDLGQLAPLLARSGYQVRHFDVGVDSFDQVSPLDADLLIVLGGPIAVYD 62

Query: 62  DARYPFLASELAAITRRLMRGAPTLGICLGAQLMARALGADVAPMGV-KEIGYAPLSLTE 120
              YP+L +E+A +  RL+   PTLG+ LGAQLMA AL A V P    KEIG++ L   +
Sbjct: 63  TEAYPWLRAEIAWLRARLLEDLPTLGLGLGAQLMAAALHARVYPGSCGKEIGWSRL---Q 119

Query: 121 AG----RHSPLAALED--VPVLHWHGDRFEIPAQATHLAGSALCAQQAFAVGRQVLALQF 174
           AG     H+ L  L D    VLHWHGD F++P  A HLA S +   QAFA GR  LALQF
Sbjct: 120 AGPHLDEHAWLRQLVDQETRVLHWHGDTFDLPRGARHLASSDMYPHQAFAWGRHCLALQF 179

Query: 175 HLEADPKRIEQWLVGHACELDHA-GIDPRHLRDAAQRLGGTLQQAARHVVTQWLAGL 230
           H E D + +EQW++GHA E+ H   I    LR  AQ+ G   ++AAR     WL  L
Sbjct: 180 HPEVDVRTVEQWMLGHAHEIAHTRNISLARLRADAQQYGRRFEEAARRFWQGWLHSL 236


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 846,607
Number of extensions: 38464
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)