BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0494.p
         (280 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309842|ref|YP_003773934.1| enzyme with a TIM-barrel fold p...   390   e-110
gi|300313097|ref|YP_003777189.1| enzyme with a TIM-barrel fold p...   149   3e-37

>gi|300309842|ref|YP_003773934.1| enzyme with a TIM-barrel fold
           protein [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  390 bits (1001), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/265 (75%), Positives = 226/265 (85%), Gaps = 1/265 (0%)

Query: 11  PDAPSDHTPTHTRHDMHGRWPQATTVEDFRHNLAATQQRIVAACARVGRDPASVRLLPVS 70
           P  P D + T  RHDMHGRWP A ++++FR NLAA  +RI AAC R GR  +SVRLLPVS
Sbjct: 4   PQFPEDES-TAIRHDMHGRWPAAASLDEFRANLAAVHRRIAAACERAGRPASSVRLLPVS 62

Query: 71  KTKSQAAIRLAYAAGCRMLGENKPQEAWQKWQALQDLPDLQWSVIGHLQTNKAKLVARFA 130
           KTK +++IRLAYAAGC +LGENKPQEA  KW+A QDL  LQWSVIGHLQTNKAKLVARFA
Sbjct: 63  KTKPESSIRLAYAAGCCLLGENKPQEACHKWEATQDLSGLQWSVIGHLQTNKAKLVARFA 122

Query: 131 SEFQALDSLRLAEVLERRLQIEGRGLDVLVQVNTSGEASKYGLEPDQVAPFLRQLRAFPA 190
           +EFQALDSLR+A+ LERRLQ EGRGLDV VQVNTSGEASKYGL P++VAPFLRQL A+PA
Sbjct: 123 AEFQALDSLRVAQALERRLQQEGRGLDVFVQVNTSGEASKYGLAPEEVAPFLRQLHAYPA 182

Query: 191 LRLRGLMTLAVLSAEPERVRPCFARLRQLRERLRQELPDGALLQDLSMGMSGDAEIAIEE 250
           LRLRGLMTLAV S +P RVRPCF+ LR LRERLRQ++P GA L +LSMGMSGD EIAIEE
Sbjct: 183 LRLRGLMTLAVFSPDPARVRPCFSLLRNLRERLRQDVPAGAQLDELSMGMSGDYEIAIEE 242

Query: 251 GATVVRVGQAIFGARDVPDSHYWPT 275
           GATVVRVGQA+FGAR +PDSHYWP+
Sbjct: 243 GATVVRVGQALFGARALPDSHYWPS 267


>gi|300313097|ref|YP_003777189.1| enzyme with a TIM-barrel fold
           protein [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  149 bits (375), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 134/240 (55%), Gaps = 11/240 (4%)

Query: 36  VEDFRHNLAATQQRIVAACARVGRDPASVRLLPVSKTKSQAAIRLAYAAGCRMLGENKPQ 95
           +     NL   QQ+I AA  R GR   +V+LL VSKT    A+  A  AG R  GEN  Q
Sbjct: 1   MSSIAQNLQHVQQQIAAAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQ 60

Query: 96  EAWQKWQALQDL-PD--LQWSVIGHLQTNKAKLVARFASEFQALDSLRLAEVLERRLQIE 152
           EA +K  AL  L PD  LQW  IG +Q+NK + +A       ++D L++A+ L  +    
Sbjct: 61  EALEKIAALPLLAPDVPLQWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPAA 120

Query: 153 GRGLDVLVQVNTSGEASKYGLEPDQVAPFLRQLRAFPALRLRGLMTLAVLSAEPERVRPC 212
              L+V +QVN SGE SK GL+P ++     Q+   P L+LRGLM +   S +  + R  
Sbjct: 121 LGALNVCLQVNISGEDSKSGLDPAELPAVAAQVAQLPGLKLRGLMAIPAPSEDVTQQRAA 180

Query: 213 FARLRQLRERLRQELPDGALLQDLSMGMSGDAEIAIEEGATVVRVGQAIFGARDVPDSHY 272
           FA +R L  +L+ +   G  L  LSMGMS D + A+ EGA++VR+G AIFGAR     HY
Sbjct: 181 FAAVRSLLAQLQAQ---GLALDTLSMGMSADLDAAVAEGASIVRIGSAIFGAR-----HY 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 886,586
Number of extensions: 33925
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,222,130
Effective search space: 239537480
Effective search space used: 239537480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)