BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0491.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase [Herbasp...    55   6e-09

>gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 874

 Score = 54.7 bits (130), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 25/188 (13%)

Query: 32  TIFFAFSGGQESDAGTLGGYPVLQADKREQSIVYTLPAGH------SLRVGDAVSMQIDW 85
           T F+A SGGQ  DAG L     L A    Q I   +   H      SL VGDAV  ++D 
Sbjct: 495 TPFYAESGGQCGDAGALEAANGLFAVADTQKIQAEVFGHHGQLIKGSLAVGDAVQAKVDA 554

Query: 86  ARRYRLMRLHFAAEMVLQLVYQ-LRPGIERIGAHIAVDKARVDFASDTSLAP-------- 136
            +R R MR H A  ++ + + + L   + + G+ +  DK R DF+ +  +          
Sbjct: 555 DQRARTMRNHSATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSHNAPMTAEEIRRVEE 614

Query: 137 -----LFATIEASAQQLVSADLPIVT---AFSDEQAGRRYWEVE-GFARMACGGTHPRTT 187
                + A + A+  QL+  D  I     A   E+ G +   +  G +   CGGTH   T
Sbjct: 615 IVNREVLANV-ATGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIGTSTELCGGTHVTRT 673

Query: 188 AEVGSLKL 195
            ++G  K+
Sbjct: 674 GDIGLFKI 681


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 691,179
Number of extensions: 27173
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)